CB293706

Overview
NameCB293706
Unique NameCB293706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293706_ssr65 microsatellite CB293706_ssr65:65..74. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3249 contig Csv1_Contig3249:50..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293706 vs. ExPASy Swiss-Prot
Match: ACP1_CASGL (Acyl carrier protein 1, chloroplastic OS=Casuarina glauca GN=ACP1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.240e-34
Identity = 88/138 (63.77%), Postives = 93/138 (67.39%), Query Frame = 3
Query:  105 MASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTGTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETKS 518
            MASVTGTS  M S   S   +  R            GKSF  LRMRSA RF V CAAKPETV+KVC IVKKQLALP D+  TGESKFA LGADSLDTVEIVMGL           SAQ+I+TVQDAADLIEKLIE KS
Sbjct:    1 MASVTGTSISMASFKASLAPS--RVSNLRSVSLPIKGKSFAPLRMRSA-RFVVCCAAKPETVEKVCAIVKKQLALPDDSAVTGESKFATLGADSLDTVEIVMGLEEEFGINVEEESAQSIATVQDAADLIEKLIEKKS 135          
BLAST of CB293706 vs. ExPASy Swiss-Prot
Match: ACP4_CUPLA (Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata GN=ACL1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.079e-29
Identity = 77/136 (56.62%), Postives = 85/136 (62.50%), Query Frame = 3
Query:  108 ASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTGTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 515
            ++  G S C+ S SCS     GR             KSFPSLR       RVSC AKPETV KVC+IVKKQLALP D+   G SKF+ALGADSLDTVEIVMGL           SAQ+I TVQDAADLIEKL+E K
Sbjct:    3 SAAAGASICIKSASCS-PLAPGRISSLRSVSLPVSRKSFPSLRSSKGSFARVSCQAKPETVAKVCRIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 137          
BLAST of CB293706 vs. ExPASy Swiss-Prot
Match: ACP1_CUPLA (Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata GN=ACL1.1 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.249e-27
Identity = 76/137 (55.47%), Postives = 86/137 (62.77%), Query Frame = 3
Query:  108 ASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRM-RSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTGTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 515
            ++  G S C+ S S S     GR             KSFPSL+  +S+   RVSC AKPETV KVC IVKKQLALP D+   G SKF+ALGADSLDTVEIVMGL           SAQ+I TVQDAADLIEKL+E K
Sbjct:    3 SAAAGASICIKSASFS-PLAPGRISSLRSVSLPVSRKSFPSLKSSKSSFALRVSCQAKPETVAKVCGIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 138          
BLAST of CB293706 vs. ExPASy Swiss-Prot
Match: ACP3_CUPLA (Acyl carrier protein 3, chloroplastic OS=Cuphea lanceolata GN=ACL1.3 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.545e-27
Identity = 73/139 (52.52%), Postives = 83/139 (59.71%), Query Frame = 3
Query:  108 ASVTGTSACMTSLSCSFKQTQ--GRXXXXXXXXXXXXGKSFPSLRMRSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTGTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 515
            A+   +  C+ S SCS  + Q                GK FPSLR    P  FRV C AK ETV +VC+IVKKQLALP D+   G SKF+ALGADSLDTVEIVMGL           SAQ+I TVQDAADLIEKL+  K
Sbjct:    4 AAAGSSLICIKSASCSLNRAQVPSGLSSLRSVSLPISGKIFPSLRSSRGPLSFRVCCQAKQETVTRVCEIVKKQLALPEDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLVGNK 142          
BLAST of CB293706 vs. ExPASy Swiss-Prot
Match: ACP2_CUPLA (Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata GN=ACL1.2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.540e-26
Identity = 73/136 (53.68%), Postives = 84/136 (61.76%), Query Frame = 3
Query:  108 ASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTGTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 515
            ++   +S C+ S SCS     GR             KSF S   R +   RV+C AKPETV KVC IVKKQLALP D+  +G SKF+ALGADSLDTVEIVMGL           SAQ+I TVQDAADLIEKL+E K
Sbjct:    3 SAAPASSICIKSASCS-ALAPGRISSLRSVSLPVSRKSFFS--RRGSFSLRVNCQAKPETVTKVCNIVKKQLALPDDSDVSGVSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 135          
BLAST of CB293706 vs. ExPASy Swiss-Prot
Match: ACP1_HORVU (Acyl carrier protein 1, chloroplastic OS=Hordeum vulgare GN=ACL1.1 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.277e-22
Identity = 64/108 (59.26%), Postives = 74/108 (68.52%), Query Frame = 3
Query:  219 SFPSLRMR-SAPRFRVSCAA------KPETVDKVCQIVKKQLALPADTTGTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETKSA 521
            SF S+  R S+ RF++ CAA      K ETVDKVC IVKKQLA+P  T  T ESKF+ LGADSLDTVEIVMGL           SAQ I+TVQDAA+LIEKL+  K+A
Sbjct:   42 SFVSISSRPSSLRFKICCAAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGADSLDTVEIVMGLEEEFNITVDETSAQDIATVQDAANLIEKLVTEKTA 149          
BLAST of CB293706 vs. ExPASy Swiss-Prot
Match: ACP3_HORVU (Acyl carrier protein 3, chloroplastic OS=Hordeum vulgare GN=ACL1.3 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 56/98 (57.14%), Postives = 70/98 (71.43%), Query Frame = 3
Query:  231 LRMRSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTGTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETKSA 521
            LR++  P RF V C+AK +TV+KVC+IVKKQLA+P  T   G +KF+ LGADSLDTVEIVMGL           SAQ I+TV+DAA LI+KL+  KS+
Sbjct:   35 LRLQPVPMRFAVCCSAKQDTVEKVCEIVKKQLAVPEGTEVCGTTKFSDLGADSLDTVEIVMGLEEEFQISVEETSAQAIATVEDAATLIDKLVSAKSS 132          
BLAST of CB293706 vs. ExPASy Swiss-Prot
Match: ACP2_HORVU (Acyl carrier protein 2, chloroplastic OS=Hordeum vulgare GN=ACL1.2 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 57/94 (60.64%), Postives = 66/94 (70.21%), Query Frame = 3
Query:  228 SLRMRSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTGTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLI 506
            S R++  P RF V CAAK ETV+KVC IVK QLAL  DT  +G S FA LGADSLDTVEIVMGL           SAQTI+TV+DAA+LI+ L+
Sbjct:   34 SFRLQPVPQRFSVCCAAKKETVEKVCDIVKSQLALSDDTEVSGSSTFADLGADSLDTVEIVMGLEEAFGISVEESSAQTIATVEDAANLIDSLV 127          
BLAST of CB293706 vs. ExPASy Swiss-Prot
Match: ACP_BRACM (Acyl carrier protein SF2, chloroplastic OS=Brassica campestris GN=Acl1.1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 54/96 (56.25%), Postives = 67/96 (69.79%), Query Frame = 3
Query:  228 SLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTGTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 515
            +LR     RF +SCAAKPETV+KV +IVKKQL+L  D     E+KFA LGADSLDTVEIVMGL            AQ I+TV++AA+LIE+L++ K
Sbjct:   38 NLRRSIPTRFSISCAAKPETVEKVSKIVKKQLSLKDDQKVVAETKFADLGADSLDTVEIVMGLEEEFDIEMAEEKAQKIATVEEAAELIEELVQLK 133          
BLAST of CB293706 vs. ExPASy Swiss-Prot
Match: ACP2_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.A2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20
Identity = 54/96 (56.25%), Postives = 66/96 (68.75%), Query Frame = 3
Query:  228 SLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTGTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 515
            +LR     R  VSCAAKPETV+KV +IVKKQL+L  D     E+KFA LGADSLDTVEIVMGL            AQ I+TV++AA+LIE+L++ K
Sbjct:   38 NLRRSIPTRLSVSCAAKPETVEKVSKIVKKQLSLKDDQKVVAETKFADLGADSLDTVEIVMGLEEEFDIEMAEEKAQKIATVEEAAELIEELVQAK 133          
The following BLAST results are available for this feature:
BLAST of CB293706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ACP1_CASGL3.240e-3463.77Acyl carrier protein 1, chloroplastic OS=Casuarina... [more]
ACP4_CUPLA1.079e-2956.62Acyl carrier protein 4, chloroplastic OS=Cuphea la... [more]
ACP1_CUPLA2.249e-2755.47Acyl carrier protein 1, chloroplastic OS=Cuphea la... [more]
ACP3_CUPLA6.545e-2752.52Acyl carrier protein 3, chloroplastic OS=Cuphea la... [more]
ACP2_CUPLA5.540e-2653.68Acyl carrier protein 2, chloroplastic OS=Cuphea la... [more]
ACP1_HORVU1.277e-2259.26Acyl carrier protein 1, chloroplastic OS=Hordeum v... [more]
ACP3_HORVU1.081e-2157.14Acyl carrier protein 3, chloroplastic OS=Hordeum v... [more]
ACP2_HORVU4.109e-2160.64Acyl carrier protein 2, chloroplastic OS=Hordeum v... [more]
ACP_BRACM1.561e-2056.25Acyl carrier protein SF2, chloroplastic OS=Brassic... [more]
ACP2_BRANA4.543e-2056.25Acyl carrier protein, chloroplastic OS=Brassica na... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cb07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cb07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293706 ID=CB293706; Name=CB293706; organism=Citrus sinensis; type=EST; length=709bp
GCTCAGTCTCAGACACACATTACATAGCACGCAGTCTTCGTGCTCTTCGT
CGTCCTCTCTCTCGCTCTCTCTCTTTTCAACTTCAAATCTCAGATCTCTA
TTCAATGGCTTCAGTTACAGGAACTTCAGCCTGCATGACCTCTCTGTCTT
GCTCTTTCAAGCAGACCCAGGGTAGGATCTCTAGTGTGAATTCAGTTTCA
CTTTCCATCAATGGGAAAAGCTTCCCATCCCTTAGAATGCGATCAGCACC
CCGCTTCCGGGTTTCCTGTGCGGCCAAGCCAGAGACCGTGGATAAGGTTT
GTCAAATTGTGAAGAAGCAGTTGGCACTCCCAGCAGATACTACCGGTACC
GGAGAGTCAAAATTCGCTGCCCTTGGAGCTGATTCTCTTGATACGGTTGA
GATTGTGATGGGACTGGAGGAGGAATTTGGGATCAGCGTTGAAGAAGAAA
GTGCCCAGACCATCTCAACCGTTCAAGATGCTGCAGATCTGATTGAGAAG
CTCATTGAGACCAAGAGTGCTTAATTAAAATGGTCTGGAGAGAGAGCCGG
GGCTTACGGACTTAGTTCGTCTAGTATCGTTTTCGATCTTTTTGTTGGCT
TGTCTCAAGGAGTTTCTAGCTTGTATTGTGAACTTGTCAGGGGCTTTTCT
ATTCTGTTGTTCCTTCTATTAGAGAGAACTCAATTAATCAGTTTGCTTGG
AATCAAAAA
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