CB293964

Overview
NameCB293964
Unique NameCB293964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293964_ssr1 microsatellite CB293964_ssr1:1..14. BLAST: Citrus ESTs to Prunus persica proteins V1
CB293964_ssr80 microsatellite CB293964_ssr80:80..97. BLAST: Citrus ESTs to Prunus persica proteins V1
CB293964_ssr335 microsatellite CB293964_ssr335:335..346. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig338 contig Csv1_Contig338:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB293964 vs. ExPASy Swiss-Prot
Match: Y4523_ARATH (Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.038e-40
Identity = 79/93 (84.95%), Postives = 85/93 (91.40%), Query Frame = 3 
Query:  435 FAEFSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDEKL 713
            F+EFS ADL+AATNNFSSD IVSESGEKAPN+VYKGRLQ    NRRWIAVKKFTK AWP+PKQFA+EAWGVGKLRH RLANLIGYCCDGDE+L
Sbjct:   58 FSEFSFADLKAATNNFSSDNIVSESGEKAPNLVYKGRLQ----NRRWIAVKKFTKMAWPEPKQFAEEAWGVGKLRHNRLANLIGYCCDGDERL 146
[Close]
BLAST of CB293964 vs. ExPASy Swiss-Prot
Match: Y5126_ARATH (Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.418e-21
Identity = 49/93 (52.69%), Postives = 71/93 (76.34%), Query Frame = 3 
Query:  435 FAEFSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDEKL 713
            F EFS+  +R AT+ F+++ IVSE GE+APNVVYKG+L+    N+R IAVK+F + +WPD +QF +EA  VG+LR+ R+ANL+G C + +E+L
Sbjct:   41 FREFSIETIRNATSGFAAENIVSEHGERAPNVVYKGKLE----NQRRIAVKRFNRKSWPDSRQFLEEAKAVGQLRNHRMANLLGCCYEDEERL 129
[Close]
BLAST of CB293964 vs. ExPASy Swiss-Prot
Match: SSP_ARATH (Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.674e-20
Identity = 49/90 (54.44%), Postives = 66/90 (73.33%), Query Frame = 3 
Query:  441 EFSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDEK 710
            +FS + L+ ATN+FS + IVS+   +  +VV+KGRLQ+G     ++A+K+F   AW DPK F +EA  VGKLRHKRL NLIGYCCDGD++
Sbjct:   37 KFSFSALKTATNHFSPENIVSD---QTSDVVFKGRLQNGG----FVAIKRFNNMAWSDPKLFLEEAQRVGKLRHKRLVNLIGYCCDGDKR 119
The following BLAST results are available for this feature:
BLAST of CB293964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y4523_ARATH3.038e-4084.95Probable serine/threonine-protein kinase At4g35230... [more]
Y5126_ARATH2.418e-2152.69Probable serine/threonine-protein kinase At5g41260... [more]
SSP_ARATH2.674e-2054.44Probable inactive receptor-like kinase SSP OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293964 ID=CB293964; Name=CB293964; organism=Citrus sinensis; type=EST; length=715bp
GAGAGAGAGAGAGAAACCAAAAACCAAAAAAAAAAAATGAAAAGAAAAAG
AAAACTAGTGCATATCTCCACTGATTAAATCTCTCTCTCTCTCTCTCTTT
TACACTCACCCACACGAGCGCTTTCACTTGGACACAAACAAAAACTCTCT
CTCGATAAGAGAAAATAAAAAATTAAAAAGACGAAAACAAAACCAAACAG
CTAATATTATTAGCTTCAGCTGCTGAGCTGGGGGGTTTGGTTGGTTCATT
TCTTCTGAGTCAACTCGGCCGAGTTATGGGCTGTTGCGAATCAACCTTCT
TAAAAGGACACCTCTCGGTTGATACCAAAAATCGCCACCACCACCAACAG
AATCACCGCAATCATCCGACTCAGCCGTCTAATGGTACTGAGGGCTCAGG
CGGACTCGCTGCCGGCTCAGATGGCGCGCCGGCTTTCGCCGAGTTCTCCT
TAGCCGACCTCAGAGCCGCTACGAATAACTTCAGTTCTGATTTTATCGTA
TCCGAGAGCGGCGAAAAGGCTCCCAATGTCGTCTATAAAGGCCGCCTTCA
AGACGGAAATGATAACCGCCGTTGGATCGCCGTTAAAAAATTCACCAAAC
ATGCCTGGCCCGATCCCAAACAGTTTGCTGATGAGGCTTGGGGTGTTGGG
AAACTGAGGCATAAGAGGCTGGCGAATTTGATTGGCTATTGTTGTGATGG
TGATGAGAAATTGCT
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