CB294004

Overview
NameCB294004
Unique NameCB294004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294004_ssr8 microsatellite CB294004_ssr8:8..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12790 contig Csv1_Contig12790:35..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294004 vs. ExPASy Swiss-Prot
Match: SAP18_ARATH (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.186e-50
Identity = 96/121 (79.34%), Postives = 107/121 (88.43%), Query Frame = 3
Query:  132 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 494
            EPVDREKTCPLLLRVFTK GGHH+ ED+AVRGKEPKDEVQIYTWKDA+LRELTDLVKEV+ AARRR+ARLSFAFVYP+  G + VREVG+T +Y  R+Q DD K L+EL FEIGDYLDVAI
Sbjct:   31 EPVDREKTCPLLLRVFTKSGGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREVGETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151          
BLAST of CB294004 vs. ExPASy Swiss-Prot
Match: SAP18_PONAB (Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.403e-29
Identity = 67/122 (54.92%), Postives = 81/122 (66.39%), Query Frame = 3
Query:  132 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 494
            +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+AI
Sbjct:   18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137          
BLAST of CB294004 vs. ExPASy Swiss-Prot
Match: SAP18_HUMAN (Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.403e-29
Identity = 67/122 (54.92%), Postives = 81/122 (66.39%), Query Frame = 3
Query:  132 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 494
            +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+AI
Sbjct:   18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137          
BLAST of CB294004 vs. ExPASy Swiss-Prot
Match: SAP18_BOVIN (Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.403e-29
Identity = 67/122 (54.92%), Postives = 81/122 (66.39%), Query Frame = 3
Query:  132 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 494
            +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+AI
Sbjct:   18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137          
BLAST of CB294004 vs. ExPASy Swiss-Prot
Match: SAP18_MOUSE (Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.139e-29
Identity = 67/122 (54.92%), Postives = 81/122 (66.39%), Query Frame = 3
Query:  132 EPVDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 494
            +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+AI
Sbjct:   18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137          
BLAST of CB294004 vs. ExPASy Swiss-Prot
Match: SAP18_DROME (Histone deacetylase complex subunit SAP18 OS=Drosophila melanogaster GN=Bin1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.487e-26
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 3
Query:  138 VDREKTCPLLLRVFTKIGGHHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 494
            +DREKTCP+LLRVF   G HHS  ++   G  P +E+QIYTW+DATL ELT LV++V P  R++     FA VYP+ ++  F +RE+G T +  G++ +DD K LA+  F IGD+LD++I
Sbjct:   18 IDREKTCPMLLRVFCSTGRHHSVSEYMF-GNVPTNELQIYTWQDATLHELTSLVRDVNPDTRKKGTYFDFAVVYPNFRSNHFQMREIGVTCT--GQKGIDDNKTLAQAKFSIGDFLDISI 134          
BLAST of CB294004 vs. ExPASy Swiss-Prot
Match: SAP18_CAEEL (Probable histone deacetylase complex subunit SAP18 OS=Caenorhabditis elegans GN=C16C10.4 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.845e-24
Identity = 57/124 (45.97%), Postives = 80/124 (64.52%), Query Frame = 3
Query:  132 EPVDREKTCPLLLRVFTKIGGHHSREDFAVR--GKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNG-RFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 494
            +P+DREK CP+LLRVF     H+   ++  R  G  P  E+Q++TW D +LRELT L+KEV P ARR+     FA V  D+   R+++R+VG T +  G R +DD K L +  FE+GD++DVAI
Sbjct:   16 KPLDREKVCPMLLRVFVANNRHNPMSEYNSRNGGSVPPSELQMHTWMDCSLRELTSLIKEVNPDARRKGTTFDFAIVQADRGSPRYILRDVGNTTN--GERGIDDNKTLQQCKFEVGDFVDVAI 137          
The following BLAST results are available for this feature:
BLAST of CB294004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SAP18_ARATH7.186e-5079.34Histone deacetylase complex subunit SAP18 OS=Arabi... [more]
SAP18_PONAB2.403e-2954.92Histone deacetylase complex subunit SAP18 OS=Pongo... [more]
SAP18_HUMAN2.403e-2954.92Histone deacetylase complex subunit SAP18 OS=Homo ... [more]
SAP18_BOVIN2.403e-2954.92Histone deacetylase complex subunit SAP18 OS=Bos t... [more]
SAP18_MOUSE3.139e-2954.92Histone deacetylase complex subunit SAP18 OS=Mus m... [more]
SAP18_DROME2.487e-2649.17Histone deacetylase complex subunit SAP18 OS=Droso... [more]
SAP18_CAEEL8.845e-2445.97Probable histone deacetylase complex subunit SAP18... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_05dh09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05dh09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294004 ID=CB294004; Name=CB294004; organism=Citrus sinensis; type=EST; length=708bp
GCCCTTTAGAGAGAGAGAACTAGAGAGGGATGGNGGGAGTAGCATAAGAG
CAAAGAAGACAAGCAGGCAGGAGCAGGCCATTACATCCTTCTGGAAGGGG
CCCTCCACCACCGCCCCCTCGCCCCCGCTTCGAGCCCGTTGATCGCGAGA
AGACTTGTCCTCTGTTGCTTCGAGTTTTCACTAAGATTGGGGGGCACCAT
TCTAGGGAGGATTTTGCAGTCAGAGGCAAGGAACCCAAGGATGAGGTTCA
AATTTATACATGGAAGGATGCTACTCTTCGTGAACTAACTGATCTGGTTA
AAGAAGTAGCACCGGCTGCAAGAAGAAGGGATGCAAGGCTTTCTTTTGCT
TTTGTTTATCCCGATAAGAATGGTCGTTTTATGGTGAGAGAGGTGGGGAA
GACCTTCTCTTATGAAGGTAGGAGGCAGTTAGATGATGGCAAAATGTTGG
CTGAACTTGGCTTTGAGATTGGAGATTACTTGGATGTGGCTATCCTATAA
AGTTTAACTGTGTAATTTGTTTAGATCGGTTATGATACGACTAGATTTGA
GACTTGGGAAAGGGCCTGTTATGTAACTTAGTGATATTTTAGCATGATTT
CACACTCTTTGTTTCAGCCCTGAGGTGTTTGTGATGATCAACACTCAGTG
CCATTTGGCTTTGTTTTTATATTTTTTTCCTAGTTGAAATTTAAAAAAAA
AAAAAAAA
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