CB294012

Overview
NameCB294012
Unique NameCB294012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294012_ssr67 microsatellite CB294012_ssr67:67..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2838 contig Csv1_Contig2838:11..623. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294012 vs. ExPASy Swiss-Prot
Match: MPCP_MOUSE (Phosphate carrier protein, mitochondrial OS=Mus musculus GN=Slc25a3 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.552e-25
Identity = 56/111 (50.45%), Postives = 66/111 (59.46%), Query Frame = 2
Query:  281 RRNFVVAAPSEPGKIEMYSPAFYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDPVKDKSISSGFGVLLKEQGISGFFRGWVPTLLGYSAQGACXXXXXXXXXXXXSDIAG 613
            R   + AA  E    E  S  +YA C  GG+LSCGLTHTAV PLDLVKC MQ+DP K K I +GF + LKE G+ G  +GW PTL+GYS QG C            S+I G
Sbjct:   38 RSRHLAAAAVEEYSCEFGSMKYYALCGFGGVLSCGLTHTAVVPLDLVKCRMQVDPQKYKGIFNGFSITLKEDGVRGLAKGWAPTLIGYSMQGLCKFGFYEVFKALYSNILG 148          
BLAST of CB294012 vs. ExPASy Swiss-Prot
Match: MPCP_RAT (Phosphate carrier protein, mitochondrial OS=Rattus norvegicus GN=Slc25a3 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.639e-25
Identity = 56/111 (50.45%), Postives = 66/111 (59.46%), Query Frame = 2
Query:  281 RRNFVVAAPSEPGKIEMYSPAFYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDPVKDKSISSGFGVLLKEQGISGFFRGWVPTLLGYSAQGACXXXXXXXXXXXXSDIAG 613
            R   + AA  E    E  S  +YA C  GG+LSCGLTHTAV PLDLVKC MQ+DP K K I +GF + LKE G+ G  +GW PTL+GYS QG C            S+I G
Sbjct:   37 RSRHLAAAAVEGYSCEFGSMKYYALCGFGGVLSCGLTHTAVVPLDLVKCRMQVDPQKYKGIFNGFSITLKEDGVRGLAKGWAPTLIGYSMQGLCKFGFYEVFKALYSNILG 147          
BLAST of CB294012 vs. ExPASy Swiss-Prot
Match: MPCP_PONAB (Phosphate carrier protein, mitochondrial OS=Pongo abelii GN=SLC25A3 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.350e-24
Identity = 53/90 (58.89%), Postives = 60/90 (66.67%), Query Frame = 2
Query:  293 VVAAPSEPGKIEMYSPAFYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDPVKDKSISSGFGVLLKEQGISGFFRGWVPTLLGYSAQGAC 562
            + AA  E    E  S  +YA C  GG+LSCGLTHTAV PLDLVKC MQ+DP K K I +GF V LKE G+ G  +GW PT LGYS QG C
Sbjct:   46 LAAAAVEEYSCEFGSAKYYALCGFGGVLSCGLTHTAVVPLDLVKCRMQVDPQKYKGIFNGFSVTLKEDGVRGLAKGWAPTFLGYSMQGLC 135          
BLAST of CB294012 vs. ExPASy Swiss-Prot
Match: MPCP_HUMAN (Phosphate carrier protein, mitochondrial OS=Homo sapiens GN=SLC25A3 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 8.748e-24
Identity = 51/93 (54.84%), Postives = 60/93 (64.52%), Query Frame = 2
Query:  284 RNFVVAAPSEPGKIEMYSPAFYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDPVKDKSISSGFGVLLKEQGISGFFRGWVPTLLGYSAQGAC 562
            RN   AA  E    +  S  F+  C +GGI+SCG THTA+ PLDLVKC MQ+DP K K I +GF V LKE G+ G  +GW PT LGYS QG C
Sbjct:   44 RNLAAAAVEEQYSCDYGSGRFFILCGLGGIISCGTTHTALVPLDLVKCRMQVDPQKYKGIFNGFSVTLKEDGVRGLAKGWAPTFLGYSMQGLC 136          
BLAST of CB294012 vs. ExPASy Swiss-Prot
Match: MPCP_BOVIN (Phosphate carrier protein, mitochondrial OS=Bos taurus GN=SLC25A3 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.143e-23
Identity = 51/93 (54.84%), Postives = 60/93 (64.52%), Query Frame = 2
Query:  284 RNFVVAAPSEPGKIEMYSPAFYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDPVKDKSISSGFGVLLKEQGISGFFRGWVPTLLGYSAQGAC 562
            RN   AA  E    +  S  F+  C +GGI+SCG THTA+ PLDLVKC MQ+DP K KSI +GF V LKE G  G  +GW PT +GYS QG C
Sbjct:   44 RNLAAAAVEEQYSCDYGSGRFFILCGLGGIISCGTTHTALVPLDLVKCRMQVDPQKYKSIFNGFSVTLKEDGFRGLAKGWAPTFIGYSLQGLC 136          
BLAST of CB294012 vs. ExPASy Swiss-Prot
Match: MPCP_CAEEL (Phosphate carrier protein, mitochondrial OS=Caenorhabditis elegans GN=F01G4.6 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.672e-23
Identity = 46/86 (53.49%), Postives = 62/86 (72.09%), Query Frame = 2
Query:  299 AAPSEPGKIEMYSPAFYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDPVKDKSISSGFGVLLKEQGISGFFRGWVPTLLGYSAQG 556
            +A S PG++E  S  +YA C +GG+LSCG+THTA+ PLDLVKC +Q++P K   I++GF   + E+G     +GW PTLLGYSAQG
Sbjct:   27 SAVSAPGQVEFGSGKYYAYCALGGVLSCGITHTAIVPLDLVKCRIQVNPEKYTGIATGFRTTIAEEGARALVKGWAPTLLGYSAQG 112          
BLAST of CB294012 vs. ExPASy Swiss-Prot
Match: MPCP_CHOFU (Phosphate carrier protein, mitochondrial OS=Choristoneura fumiferana PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.307e-21
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 2
Query:  326 EMYSPAFYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDPVKDKSISSGFGVLLKEQGISGFFRGWVPTLLGYSAQGAC 562
            E  S  ++A C +GGILSCG+THTAV PLDLVKC +Q+D  K K++ +GF V ++E+G+ G  +GW PT +GYS QG C
Sbjct:   42 EFGSTKYFALCGLGGILSCGITHTAVVPLDLVKCRLQVDADKYKNVVNGFRVSVREEGLRGLAKGWAPTFIGYSLQGLC 120          
BLAST of CB294012 vs. ExPASy Swiss-Prot
Match: MPCP_SCHPO (Probable mitochondrial phosphate carrier protein OS=Schizosaccharomyces pombe GN=SPBC1703.13c PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.473e-19
Identity = 39/85 (45.88%), Postives = 61/85 (71.76%), Query Frame = 2
Query:  305 PSEPGK-IEMYSPAFYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDPVKDKSISSGFGVLLKEQGISGFFRGWVPTLLGYSAQG 556
            P+ P K +++Y+P +Y  CT+GG+L+CG TH+A+TPLDL+KC  Q++P       +GF  +L ++G+ G + G +PTL+GYS QG
Sbjct:    8 PAPPKKTLQLYTPQYYGLCTLGGLLACGTTHSAITPLDLIKCRKQVNPNIYPGNIAGFKTILSKEGLRGLYTGGMPTLIGYSLQG 92          
BLAST of CB294012 vs. ExPASy Swiss-Prot
Match: PIC2_YEAST (Mitochondrial phosphate carrier protein 2 OS=Saccharomyces cerevisiae GN=PIC2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.072e-17
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 2
Query:  311 EPGKIEMYSPAFYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDPVKDKSISSGFGVLLKEQGISGFFRGWVPTLLGYSAQGA 559
            +P KI++Y+  FYA CT+GGI++CG TH+++TPLDLVKC +Q++P    S   GF  ++  +G    + G+  T +GYS QGA
Sbjct:    6 QPRKIQLYTKEFYATCTLGGIIACGPTHSSITPLDLVKCRLQVNPKLYTSNLQGFRKIIANEGWKKVYTGFGATFVGYSLQGA 88          
BLAST of CB294012 vs. ExPASy Swiss-Prot
Match: MCFN_DICDI (Mitochondrial substrate carrier family protein N OS=Dictyostelium discoideum GN=mcfN PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.310e-11
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 2
Query:  335 SPAFYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDPVKDKSISSGFGVLLKEQGISGFFRGWVPTLLGYSAQG 556
            +P+ +     GG LSC +TH+ V PLD+VK  +Q +P K   + +GF  ++KEQG SG  +G  PT +GY+ QG
Sbjct:    6 TPSLFLKYGFGGALSCSITHSLVVPLDVVKTLLQTNPGKYTGMMNGFSTVIKEQGPSGLLQGLGPTAVGYALQG 79          
The following BLAST results are available for this feature:
BLAST of CB294012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
MPCP_MOUSE3.552e-2550.45Phosphate carrier protein, mitochondrial OS=Mus mu... [more]
MPCP_RAT4.639e-2550.45Phosphate carrier protein, mitochondrial OS=Rattus... [more]
MPCP_PONAB1.350e-2458.89Phosphate carrier protein, mitochondrial OS=Pongo ... [more]
MPCP_HUMAN8.748e-2454.84Phosphate carrier protein, mitochondrial OS=Homo s... [more]
MPCP_BOVIN1.143e-2354.84Phosphate carrier protein, mitochondrial OS=Bos ta... [more]
MPCP_CAEEL9.672e-2353.49Phosphate carrier protein, mitochondrial OS=Caenor... [more]
MPCP_CHOFU5.307e-2154.43Phosphate carrier protein, mitochondrial OS=Choris... [more]
MPCP_SCHPO8.473e-1945.88Probable mitochondrial phosphate carrier protein O... [more]
PIC2_YEAST6.072e-1745.78Mitochondrial phosphate carrier protein 2 OS=Sacch... [more]
MCFN_DICDI1.310e-1143.24Mitochondrial substrate carrier family protein N O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06bh10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bh10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294012 ID=CB294012; Name=CB294012; organism=Citrus sinensis; type=EST; length=613bp
CCGGGTTCTAACCAATTGGCAGCGAGAGACAGGAGGAGGAGAAGAGAAAG
ATAAAATTACAAGAATTCTCTCTCTCTCGCTCTTTTTCTCTATAATTCAA
TCAAGCTTTTAACTCTCGAAATCAAATTTCCAAAATTCCGAGATGGCCCT
CACAGAATCTTATAAGAAAAACTCTCTGATACCAAGCTACCTCTACTCCT
CCCAAACATCCTTCCCGTCCACGGCGGCTTTCAATGGAGCGGCAGCAGCC
GCCACGTCGCCGGCTACTCCATCCACGGCGAGGAGGAACTTCGTTGTTGC
GGCACCGAGCGAGCCAGGGAAGATAGAGATGTACTCCCCTGCATTCTACG
CCGCTTGTACCGTCGGCGGGATCCTCAGCTGCGGCCTCACTCACACGGCC
GTGACTCCTCTTGACCTCGTCAAGTGCAATATGCAGATTGATCCTGTTAA
GGACAAAAGCATATCATCTGGTTTTGGAGTTTTGCTCAAGGAACAGGGAA
TCTCGGGCTTCTTCAGGGGATGGGTACCTACCTTGCTTGGTTACAGCGCC
CAAGGTGCTTGCAAGTTTGGATTCTACGAGTTCTTCAAGAAGTACTACTC
TGACATTGCTGGT
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