CB304828
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB304828 vs. ExPASy Swiss-Prot
Match: IMP3_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus GN=Imp3 PE=2 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 2.788e-50 Identity = 91/170 (53.53%), Postives = 131/170 (77.06%), Query Frame = -1 Query: 146 VVKKVNFLEWK-REGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 652 ++K+V+FL W+ + E +L+RY + R++Y +Y+ L V++L L+ + RDPFR+ + LL+KLY MG++P+R SL LCD +S SSFCRRRL T+L++L+ A+HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVD+SKIKR VLEYN++ DD+D Sbjct: 12 LLKQVDFLNWEVTDHNLHELRVLRRYRLQRREEYTRYNQLSRAVRELARRLRDLPERDPFRVRASAALLDKLYAMGLVPTRGSLELCDSVSASSFCRRRLPTLLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181
BLAST of CB304828 vs. ExPASy Swiss-Prot
Match: IMP3_BOVIN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus GN=IMP3 PE=2 SV=1) HSP 1 Score: 195.667 bits (496), Expect = 1.807e-49 Identity = 89/170 (52.35%), Postives = 130/170 (76.47%), Query Frame = -1 Query: 146 VVKKVNFLEWK-REGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 652 ++K+V+FL W+ + E +L+RY + R+DY +Y+ L V++L L+ + RDPFR+ + LL+KLY +G++P+R S LCD ++ SSFCRRRL T+L++L+ A+HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVD+SKIKR VLEYN++ DD+D Sbjct: 12 LLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDPFRVRSSAALLDKLYALGLVPTRGSQELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181
BLAST of CB304828 vs. ExPASy Swiss-Prot
Match: IMP3_YEAST (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae GN=IMP3 PE=1 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 2.360e-49 Identity = 85/170 (50.00%), Postives = 130/170 (76.47%), Query Frame = -1 Query: 146 VVKKVNFLEWKREGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLA-LCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 652 ++KKV+FLEWK++ GHR+ +++ YH+ R+DY KY+ +CG +++L N L + P DPFR + +LL+KLY MGV+ ++ ++ L + ++VS+ CRRRL I+ RLK AE +++AV +IEQGH+RVGP + DPA+LVTRNMED++TWVD SKIK+ +L Y +++DD+D Sbjct: 12 LLKKVDFLEWKQDQGHRDTQVMRTYHIQNREDYHKYNRICGDIRRLANKLSLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNMEDYVTWVDNSKIKKTLLRYRNQIDDFD 181
BLAST of CB304828 vs. ExPASy Swiss-Prot
Match: IMP3_HUMAN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens GN=IMP3 PE=1 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 3.082e-49 Identity = 89/170 (52.35%), Postives = 130/170 (76.47%), Query Frame = -1 Query: 146 VVKKVNFLEWK-REGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 652 ++K+V+FL W+ + E +L+RY + R+DY +Y+ L V++L L+ + RD FR+ + LL+KLY +G++P+R SL LCD ++ SSFCRRRL T+L++L+ A+HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVD+SKIKR VLEYN++ DD+D Sbjct: 12 LLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181
BLAST of CB304828 vs. ExPASy Swiss-Prot
Match: IMP3_SCHPO (U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe GN=imp3 PE=2 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 1.998e-48 Identity = 82/173 (47.40%), Postives = 134/173 (77.46%), Query Frame = -1 Query: 140 VVKKVNFLEWKRE-GGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDH-LSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYDAM 652 +++KV+FL +K + HR+ M+++RYH++ R++Y+KY+ +CG ++L + L +DP DPFR++ ++LLEKL++MG++PS+ ++ ++ +VS+ CRRRL I+ +L+ ++ + EA IEQGH+RVGP +TDPA+LVTR++EDF+TW DTSKIKR + +YNDK+DDYD + Sbjct: 11 LLRKVDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPAYLVTRSLEDFVTWTDTSKIKRTIAKYNDKLDDYDLL 183
BLAST of CB304828 vs. ExPASy Swiss-Prot
Match: YS4L_PNECA (Putative 40S ribosomal protein S4-like (Fragment) OS=Pneumocystis carinii GN=RBP PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.754e-36 Identity = 73/158 (46.20%), Postives = 110/158 (69.62%), Query Frame = -1 Query: 185 VVKKVNFLEWKRE-GGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDH-LSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKR 652 ++ K +FL +K++ HR+ +++RYH+ R+DY KY+ L G++ + N L ++P D F MLL KL++M ++ S L+ ++ L+VS+FCRRRL ++ RLK E + +V Y+E GH+RVGPE +TDPAF VTRNMEDF+TWVD+SKI+R Sbjct: 11 LLTKHDFLNYKKDDNNHRDVNVIRRYHIPQREDYFKYNQLVGLLLGIANKLSLLEPTDSFGNLHKKMLLGKLFDMALLTSTPKLSDVENKLTVSAFCRRRLPVVMCRLKMCETVSTSVKYVEHGHVRVGPEVITDPAFFVTRNMEDFVTWVDSSKIRR 168
BLAST of CB304828 vs. ExPASy Swiss-Prot
Match: YS4L_CAEEL (Putative 40S ribosomal protein S4-like OS=Caenorhabditis elegans GN=C48B6.2 PE=2 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.009e-33 Identity = 62/172 (36.05%), Postives = 111/172 (64.53%), Query Frame = -1 Query: 137 VVKKVNFLEWKREGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYDAMN 652 ++KK +F+ W+ + ++ +L++++V R+ Y Y++L +++ +++K + DPFR + T+ +L K Y G++P+ +L ++ +SF RRRL ++ + E +K A +EQGH+R+G + VTDPAF+VTR+ ED ITW SKIK+ V++YN+ DD+D M+ Sbjct: 12 LLKKTDFMSWQVDQQGKQGDMLRKFYVKKREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGKVTGASFARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKASKIKKHVMDYNNTRDDFDLMD 183 The following BLAST results are available for this feature:
BLAST of CB304828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB304828 ID=CB304828; Name=CB304828; organism=Citrus sinensis; type=EST; length=652bpback to top |