CB304926
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB304926 vs. ExPASy Swiss-Prot
Match: EXOS1_MOUSE (3'-5' exoribonuclease CSL4 homolog OS=Mus musculus GN=Exosc1 PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.065e-30 Identity = 67/125 (53.60%), Postives = 92/125 (73.60%), Query Frame = -2 Query: 205 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARA-YFLSTAKNDLGVVSAESTAGGTMVPISWTEMQCPLTGQTEQRKVAKV 576 +P+ G+VV +V+ + +R A I+ VG+ ++ F G IR++D+RATE DKV+++ SFRPGDIV A V+SLGDA++ Y L+TA+N+LGVV A S +G MVPISW EMQCP T E RKVA+V Sbjct: 64 LPDVGAVVTCKVSSINSRFAKVHILYVGSTPLKNAFRGTIRKEDIRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTKEFRKVARV 188
BLAST of CB304926 vs. ExPASy Swiss-Prot
Match: EXOS1_HUMAN (3'-5' exoribonuclease CSL4 homolog OS=Homo sapiens GN=EXOSC1 PE=1 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.065e-30 Identity = 67/125 (53.60%), Postives = 92/125 (73.60%), Query Frame = -2 Query: 205 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARA-YFLSTAKNDLGVVSAESTAGGTMVPISWTEMQCPLTGQTEQRKVAKV 576 +P+ G++V +V+ + +R A I+ VG+ ++ F G IR++DVRATE DKV+++ SFRPGDIV A V+SLGDA++ Y L+TA+N+LGVV A S +G MVPISW EMQCP T E RKVA+V Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTKEFRKVARV 188
BLAST of CB304926 vs. ExPASy Swiss-Prot
Match: CSL4_SCHPO (Exosome complex component csl4 OS=Schizosaccharomyces pombe GN=csl4 PE=2 SV=2) HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25 Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = -2 Query: 208 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAEST-AGGTMVPISWTEMQCPLTGQTEQRKVAK 576 +P GS+V+ARV+++ R A+ +I V +++F G+I QD+RATE +KV + SFRPGDIVRA V+SLGD +YFL+TA+NDLGV+ A+S+ G M P+ + MQ +G TE RK AK Sbjct: 54 LPNVGSIVLARVSRINARQATVNISVVDDVCTKDEFQGVIHVQDIRATEKNKVKVQNSFRPGDIVRALVISLGDGSSYFLTTARNDLGVIFAQSSETGEQMFPVDYQHMQTK-SGYTEMRKCAK 176
BLAST of CB304926 vs. ExPASy Swiss-Prot
Match: CSL4_YEAST (Exosome complex component CSL4 OS=Saccharomyces cerevisiae GN=CSL4 PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.120e-22 Identity = 66/179 (36.87%), Postives = 91/179 (50.84%), Query Frame = -2 Query: 208 PDSPDQRATVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAK----------------------------------SVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAEST--AGGTMVPISWTEMQCPLTGQTEQRKVAK 636 P + R T + + +P+ G +V+ RVT++ + A+ +I+ V K + E F GIIR QDVR+T+ D+V + F+PGDIVRA VLSLGD Y+L+TA+NDLGVV A + AGG M W M P+TG TE+RK AK Sbjct: 112 PGTEKGRKTNKYANNDFANNLPKEGDIVLTRVTRLSLQRANVEILAVEDKPSPIDSGIGSNGSGIVAAGGGSGAATFSVSQASSDLGETFRGIIRSQDVRSTDRDRVKVIECFKPGDIVRAQVLSLGDGTNYYLTTARNDLGVVFARAANGAGGLMYATDWQMMTSPVTGATEKRKCAK 290 The following BLAST results are available for this feature:
BLAST of CB304926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB304926 ID=CB304926; Name=CB304926; organism=Citrus sinensis; type=EST; length=643bpback to top |