CB322146
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG3_IPOBA (ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2) HSP 1 Score: 238.424 bits (607), Expect = 2.092e-62 Identity = 126/158 (79.75%), Postives = 138/158 (87.34%), Query Frame = 2 Query: 140 MAMAALRREGRRFAT-PLISPRPIAAIRSPFLS--EEDAPLGVRSISTQIVRNRMKSVKNIQKITKAMKMVTASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAIL 604 MAMAALRREGRR A P SP P+ A+RS +S EE GVRSISTQ+VRNRMKSVKNIQKITKAMKMV ASKLRAIQ +AENSRGLWQPFTALLGDTP+VD KKNVI+TISSDKGLCGGINST+VK S+++HKLNSGP+KENKYVILGEKAKA L Sbjct: 1 MAMAALRREGRRLAAAPFTSPTPLNALRSSLVSPSEEIGLSGVRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAIQTRAENSRGLWQPFTALLGDTPSVDVKKNVIITISSDKGLCGGINSTSVKTSRNIHKLNSGPEKENKYVILGEKAKAQL 158
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG3_ARATH (ATP synthase subunit gamma, mitochondrial OS=Arabidopsis thaliana GN=ATPC PE=1 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 2.828e-59 Identity = 117/156 (75.00%), Postives = 138/156 (88.46%), Query Frame = 2 Query: 140 MAMAALRREGRRFATPLISPRPIAAIRSPFLSE-EDAPLGVRSISTQIVRNRMKSVKNIQKITKAMKMVTASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAIL 604 MAMA RREGRR P I+ RPIAAIRSP S+ E+ LGVRSISTQ+VRNRMKSVKNIQKITKAMKMV ASKLRA+Q +AENSRGLWQPFTALLGD P++D KK+V+VT+SSDKGLCGGINST VK+S++L+KLN+GP+KE ++VI+GEKAKAI+ Sbjct: 1 MAMAVFRREGRRLL-PSIAARPIAAIRSPLSSDQEEGLLGVRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAVQGRAENSRGLWQPFTALLGDNPSIDVKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIM 155
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG_RHOCS (ATP synthase gamma chain OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=atpG PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 8.913e-13 Identity = 46/127 (36.22%), Postives = 68/127 (53.54%), Query Frame = 2 Query: 269 STQIVRNRMKSVKNIQKITKAMKMVTASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAIL 604 S + +RNR+ SVK+ QKIT AMKMV ASKLR Q +AE R +L T T + +++V ++SD+GLCGG NST V+ ++ K +G + K + +G K + +L Sbjct: 3 SLKDIRNRIGSVKSTQKITSAMKMVAASKLRRAQEQAEAGRPFADRMARMLASLAANVSGATGGPRLMTGTGSDQVHLLVVVTSDRGLCGGFNSTIVREARRTIKRLTGEGRTVKLLCVGRKGRDLL 129
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG_BOVIN (ATP synthase subunit gamma, mitochondrial OS=Bos taurus GN=ATP5C1 PE=1 SV=3) HSP 1 Score: 72.4034 bits (176), Expect = 1.986e-12 Identity = 48/120 (40.00%), Postives = 74/120 (61.67%), Query Frame = 2 Query: 257 VRSIST-QIVRNRMKSVKNIQKITKAMKMVTASKLRAIQVKAENSRGLWQPFTALL--GDTPTV-DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAIL 604 VR+++T + + R+KS+KNIQKITK+MKMV A+K + + + +R AL D T D KK++I+ +SSD+GLCG I+S+ K KS + KE K + +G+K ++IL Sbjct: 22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSIL 141
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG_MOUSE (ATP synthase subunit gamma, mitochondrial OS=Mus musculus GN=Atp5c1 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.424e-12 Identity = 48/124 (38.71%), Postives = 72/124 (58.06%), Query Frame = 2 Query: 257 VRSIST-QIVRNRMKSVKNIQKITKAMKMVTASK-------LRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAIL 604 VR+++T + + R+KS+KNIQKITK+MKMV A+K L+ +V S L++ + D KK++I+ +SSD+GLCG I+S+ K K+ + KE V +GEK K IL Sbjct: 22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEKADIKAPE----DKKKHLIIGVSSDRGLCGAIHSSVAKQMKNEVAALTAAGKEVMIVGVGEKIKGIL 141
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG_EHRCR (ATP synthase gamma chain OS=Ehrlichia chaffeensis (strain Arkansas) GN=atpG PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.424e-12 Identity = 42/110 (38.18%), Postives = 66/110 (60.00%), Query Frame = 2 Query: 290 RMKSVKNIQKITKAMKMVTASKLRAIQVKAENSRGLWQPFTALLGDTPTVD-------AKKN--VIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKA 592 R+KSVK+IQK TK M+M++A+KL +Q K EN++ ++++ P+ AKK ++V +SSD+GLCG N+ VK +KS + +KE K + G+KA Sbjct: 10 RIKSVKSIQKTTKVMQMISAAKLHRVQQKLENAKKHLLELSSIVDYVPSDGVHNCASIAKKERVLLVVMSSDRGLCGNFNNLIVKFTKSYVEKLESSNKEVKLIFFGKKA 119
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG_ROSDO (ATP synthase gamma chain OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpG PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 7.546e-12 Identity = 40/124 (32.26%), Postives = 71/124 (57.26%), Query Frame = 2 Query: 269 STQIVRNRMKSVKNIQKITKAMKMVTASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAK 595 S + ++NR++SVK+ +KITKAM+MV A+KLR Q AE SR + F A++ + T K +++ ++S++GLCGG N+ K++++ + G K+ K + +G+K + Sbjct: 3 SLKDLKNRIESVKSTRKITKAMQMVAAAKLRRAQEAAEQSRPYTERFNAVMAGLAASVGGSDSAPKLLSGTGSDKVQLLIVMTSERGLCGGFNTNIAKLARAHAQKLQGEGKDVKILTVGKKGR 126
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG_RAT (ATP synthase subunit gamma, mitochondrial OS=Rattus norvegicus GN=Atp5c1 PE=1 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 7.546e-12 Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 2 Query: 281 VRNRMKSVKNIQKITKAMKMVTASKLRAIQVKAENSRGLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAIL 604 + R+KS+KNIQKITK+MKMV A+K + + + +R AL D KK++I+ +SSD+GLCG I+S+ K K+ + KE V +GEK K+IL Sbjct: 6 ITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEKAEIKGPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKIKSIL 116
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG_ERYLH (ATP synthase gamma chain OS=Erythrobacter litoralis (strain HTCC2594) GN=atpG PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.681e-11 Identity = 44/128 (34.38%), Postives = 71/128 (55.47%), Query Frame = 2 Query: 269 STQIVRNRMKSVKNIQKITKAMKMVTASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA------------------KKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKA 598 S + +++R+ SVK+ QKITKA +MV A+KLR Q AE +R P+ L D A +K+++V +++DKGLCGG+NS VK +K+ K K+ ++ ++G+K +A Sbjct: 3 SLKELKDRIGSVKSTQKITKAKQMVAAAKLRRAQANAEAAR----PYAERLADVMASLAGKVSGDSAPRLLAGSGNDQKHLLVVVNTDKGLCGGLNSNIVKEAKAQAKKLIAAGKDVQFYLVGKKGRA 126
BLAST of CB322146 vs. ExPASy Swiss-Prot
Match: ATPG_MACFA (ATP synthase subunit gamma, mitochondrial OS=Macaca fascicularis GN=ATP5C1 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.195e-11 Identity = 45/124 (36.29%), Postives = 73/124 (58.87%), Query Frame = 2 Query: 257 VRSIST-QIVRNRMKSVKNIQKITKAMKMVTASK-------LRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAIL 604 VR+++T + + R+KS+KNIQKITK+MKMV A+K L+ ++ S L++ + + D KK++++ +SSD+GLCG I+S+ K KS + KE V +G+K + IL Sbjct: 22 VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYEKADIKVPE----DKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGIL 141 The following BLAST results are available for this feature:
BLAST of CB322146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB322146 ID=CB322146; Name=CB322146; organism=Citrus sinensis; type=EST; length=605bpback to top |