CB322177

Overview
NameCB322177
Unique NameCB322177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length373
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8076 contig Csv1_Contig8076:3..375. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB322177 vs. ExPASy Swiss-Prot
Match: LIRP1_ORYSJ (Light-regulated protein OS=Oryza sativa subsp. japonica GN=LIR1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.996e-12
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 2 
Query:  152 ASRRSAIKV---AATTSNDPSTFDYNSAFSVFPAEACEVIGGDACLAEMYPEAKLKPEAKNDTSTTASEPIEREYL 370
            A RR A++V   AA  + + +  DY+S  SVFP EAC++IGG+AC  +MYPEAKL   A    S  A+E ++R+YL
Sbjct:   28 APRRVALRVRAAAAAVAVEAAEVDYSSNISVFPMEACDLIGGEACNVQMYPEAKLSSSAAVAVSRAAAEEVDRDYL 103
The following BLAST results are available for this feature:
BLAST of CB322177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LIRP1_ORYSJ2.996e-1247.37Light-regulated protein OS=Oryza sativa subsp. jap... [more]
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Properties
Property NameValue
Genbank descriptionEST0298 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB224 similar to ccr protein (acc# S52663), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322177 ID=CB322177; Name=CB322177; organism=Citrus sinensis; type=EST; length=373bp
ACAACGCAAAACACACAACATAAACACAACACAAATATTCAAAATGCAGG
CTGCTTTGAGCATTTCACCAACAACCCTTGTCCCTCTAACAACCTCCAAG
AACTTTTCCCAAGTGGCCATTTCTACTCCAAAGCTAGTAGGCAGCTCACT
TGCTTCCAGACGCAGCGCAATCAAAGTAGCTGCTACAACAAGCAATGACC
CTTCCACATTTGATTACAATTCTGCCTTCTCGGTGTTTCCAGCAGAGGCG
TGTGAGGTAATCGGTGGAGATGCGTGCTTGGCAGAGATGTATCCTGAGGC
GAAGTTGAAACCAGAGGCCAAGAACGACACATCAACAACTGCCTCAGAGC
CCATTGAGAGAGAGTATTTAGAG
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