CB322187

Overview
NameCB322187
Unique NameCB322187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSJ (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.294e-50
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG GVMMNDRKSRFSINGKPIYHFMGTSTFSQ+
Sbjct:   61 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATGVGVMMNDRKSRFSINGKPIYHFMGTSTFSQY 154          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSI (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.294e-50
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG GVMMNDRKSRFSINGKPIYHFMGTSTFSQ+
Sbjct:   61 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATGVGVMMNDRKSRFSINGKPIYHFMGTSTFSQY 154          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADHX_ARATH (Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 4.757e-49
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            PEGLFPCILGHEAAGIVESVGEGVTEVQ GDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG G+MMNDRKSRFS+NGKPIYHFMGTSTFSQ+
Sbjct:   59 PEGLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQY 152          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: ADHX_MAIZE (Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.060e-48
Identity = 87/94 (92.55%), Postives = 91/94 (96.81%), Query Frame = 1
Query:    1 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQF 282
            PEGLFPCILGHEAAGIVESVGEGVT+VQPGDHVIPCYQAEC+ECKFCKSGKTNLCGKVR ATG GVMMND KSRFS+NGKPIYHFMGTSTFSQ+
Sbjct:   61 PEGLFPCILGHEAAGIVESVGEGVTDVQPGDHVIPCYQAECKECKFCKSGKTNLCGKVRSATGVGVMMNDMKSRFSVNGKPIYHFMGTSTFSQY 154          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_CITSI (Photosystem Q(B) protein OS=Citrus sinensis GN=psbA PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.384e-48
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_LOTJA (Photosystem Q(B) protein OS=Lotus japonicus GN=psbA PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.259e-48
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESENLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_LOBMA (Photosystem Q(B) protein OS=Lobularia maritima GN=psbA PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.259e-48
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESENLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_CUSEX (Photosystem Q(B) protein OS=Cuscuta exaltata GN=psbA PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.259e-48
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESENLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_VIGUN (Photosystem Q(B) protein OS=Vigna unguiculata GN=psbA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.869e-48
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94          
BLAST of CB322187 vs. ExPASy Swiss-Prot
Match: PSBA_TOBAC (Photosystem Q(B) protein OS=Nicotiana tabacum GN=psbA PE=3 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 6.869e-48
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 1
Query:  340 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 621
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFY 94          
The following BLAST results are available for this feature:
BLAST of CB322187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 340
Match NameE-valueIdentityDescription
ADHX_ORYSJ3.294e-5096.81Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHX_ORYSI3.294e-5096.81Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHX_ARATH4.757e-4993.62Alcohol dehydrogenase class-3 OS=Arabidopsis thali... [more]
ADHX_MAIZE1.060e-4892.55Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH P... [more]
PSBA_CITSI1.384e-48100.00Photosystem Q(B) protein OS=Citrus sinensis GN=psb... [more]
PSBA_LOTJA5.259e-4898.94Photosystem Q(B) protein OS=Lotus japonicus GN=psb... [more]
PSBA_LOBMA5.259e-4898.94Photosystem Q(B) protein OS=Lobularia maritima GN=... [more]
PSBA_CUSEX5.259e-4898.94Photosystem Q(B) protein OS=Cuscuta exaltata GN=ps... [more]
PSBA_VIGUN6.869e-4898.94Photosystem Q(B) protein OS=Vigna unguiculata GN=p... [more]
PSBA_TOBAC6.869e-4898.94Photosystem Q(B) protein OS=Nicotiana tabacum GN=p... [more]

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Properties
Property NameValue
Genbank descriptionEST0309 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB267 similar to class III alcohol dehydrogenase(acc# AAB19117), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322187 ID=CB322187; Name=CB322187; organism=Citrus sinensis; type=EST; length=623bp
CCTGAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGGCTGCTGGGATTGT
GGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCAGGTGATCATGTCA
TCCCTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTTTTGCAAGTCTGGA
AAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGTGCTGGTGTCAT
GATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGAAAGCCTATCTATC
ACTTCATGGGAACCTCAACATTTAGCCAGTTTTTTGCAGAATTTGTATGC
TTGGGAGTCCCTGATGATTAAATAAACCAAGATTTTACCATGACTGCAAT
TTTAGAGAGACGCGAAAGCGAACGCCTATGGGGTCGCTTCTGTAACTGGA
TAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATG
ATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGC
TGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTC
TACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA
GCTATAGGTTTGCATTTTTACCC
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