CB417344
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB417344 vs. ExPASy Swiss-Prot
Match: DEF1B_SOLLC (Peptide deformylase 1B, chloroplastic OS=Solanum lycopersicum GN=PDF1B PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 9.507e-22 Identity = 63/121 (52.07%), Postives = 72/121 (59.50%), Query Frame = 1 Query: 1 AMACATRLCSSSLPHALFPVLINQTAVSTKLLRFNRLYSTARLFSSPNRTNLPLLT---QAKRRYGFSTKEDPVASPADLRFERSLKIVEYPDPILRAKNKRIDTFDDNLKKLVDEMFDFM 354 AMA A+ SSS L P+L ++ S +R S LF S + P L QA+R TK D +A+PADL F LKIVEYPDPILRAKNKRID FD NLKKLVDEMFD M Sbjct: 2 AMAAASWASSSSFTRFLRPLLSRNSSPSPISYSLHRYKSANCLFFSASSNKPPKLAVYAQARRVLSSKTKGDEIATPADLSFVVPLKIVEYPDPILRAKNKRIDNFDANLKKLVDEMFDIM 122
BLAST of CB417344 vs. ExPASy Swiss-Prot
Match: DEF1B_ARATH (Peptide deformylase 1B, chloroplastic OS=Arabidopsis thaliana GN=PDF1B PE=1 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 3.381e-19 Identity = 58/116 (50.00%), Postives = 70/116 (60.34%), Query Frame = 1 Query: 10 CATRLCSSSLPHALFPVLINQTAVSTKLLRFNRLYSTARLFSSPNRTNLPLLTQAKRRYG-FSTKEDPVASPADLRFERSLKIVEYPDPILRAKNKRIDTFDDNLKKLVDEMFDFM 354 C L + L L PVL + +T + RL ST S+ NRT+ PL + + S K+D VAS D++FE LKIVEYPDPILRAKNKRID FD+NLK LVD MFD M Sbjct: 4 CNCFLQAPPLSRILLPVLSRRA--TTLSAGYGRLKSTVTFCSTVNRTS-PLTSSVRAEVKRVSRKDDKVASATDVQFETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVM 116
BLAST of CB417344 vs. ExPASy Swiss-Prot
Match: DEF1B_ORYSJ (Peptide deformylase 1B, chloroplastic OS=Oryza sativa subsp. japonica GN=PDF1B PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.920e-14 Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1 Query: 163 LTQAKRRYGFST--------KEDPVASPADLRFERSLKIVEYPDPILRAKNKRIDTFDDNLKKLVDEMFDFM 354 L A+ R GF + +++ A+ ADL+FE LK+V+YPDPILRA+NKRI+TFDDNL+ L DEMFD M Sbjct: 42 LAAARARRGFGSAVATAPPAEDEDFATAADLQFEPPLKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVM 113 The following BLAST results are available for this feature:
BLAST of CB417344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 3
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB417344 ID=CB417344; Name=CB417344; organism=Citrus sinensis; type=EST; length=354bpback to top |