CB610494

Overview
NameCB610494
Unique NameCB610494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length401
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2542 contig Csv1_Contig2542:612..1012. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610494 vs. ExPASy Swiss-Prot
Match: GPX4_CITSI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Citrus sinensis GN=CSA PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.454e-14
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 2
Query:    5 KWNFPKFLVDKEGNVXERYAPTTSPLSIEKDIKKLLET 118
            KWNF KFLVDKEGNV ERYAPTTSPLSIEKDIKKLLET
Sbjct:  129 KWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLET 166          
BLAST of CB610494 vs. ExPASy Swiss-Prot
Match: GPX6_ARATH (Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial OS=Arabidopsis thaliana GN=GPX6 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.485e-11
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 2
Query:    5 KWNFPKFLVDKEGNVXERYAPTTSPLSIEKDIKKLL 112
            KWNF KFLVDK+GNV +R+APTTSPLSIEKD+KKLL
Sbjct:  193 KWNFAKFLVDKDGNVVDRFAPTTSPLSIEKDVKKLL 228          
BLAST of CB610494 vs. ExPASy Swiss-Prot
Match: GPX4_HELAN (Probable phospholipid hydroperoxide glutathione peroxidase OS=Helianthus annuus GN=GPXHA-2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.940e-11
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 2
Query:    5 KWNFPKFLVDKEGNVXERYAPTTSPLSIEKDIKKLL 112
            KWNF KFLVD+EG V +RYAPTTSPLSIEKDIKKLL
Sbjct:  142 KWNFTKFLVDREGKVVDRYAPTTSPLSIEKDIKKLL 177          
BLAST of CB610494 vs. ExPASy Swiss-Prot
Match: GPX4_SPIOL (Probable phospholipid hydroperoxide glutathione peroxidase OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.533e-11
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 2
Query:    5 KWNFPKFLVDKEGNVXERYAPTTSPLSIEKDIKKLL 112
            KWNF KFLVDK+GNV +RYAPTTSP SIEKD+KKLL
Sbjct:  132 KWNFTKFLVDKDGNVVDRYAPTTSPKSIEKDVKKLL 167          
BLAST of CB610494 vs. ExPASy Swiss-Prot
Match: GPX4_TOBAC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.371e-11
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 2
Query:    5 KWNFPKFLVDKEGNVXERYAPTTSPLSIEKDIKKLL 112
            KWNF KFLVDKEGNV +RY+PTT+P S+EKDIKKLL
Sbjct:  131 KWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLL 166          
BLAST of CB610494 vs. ExPASy Swiss-Prot
Match: GPX4_NICSY (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.371e-11
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 2
Query:    5 KWNFPKFLVDKEGNVXERYAPTTSPLSIEKDIKKLL 112
            KWNF KFLVDKEGNV +RY+PTT+P S+EKDIKKLL
Sbjct:  131 KWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLL 166          
BLAST of CB610494 vs. ExPASy Swiss-Prot
Match: GPX4_GOSHI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.371e-11
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 2
Query:    5 KWNFPKFLVDKEGNVXERYAPTTSPLSIEKDIKKLL 112
            KWNF KFLVDKEGNV +RY+PTT+P S+EKDIKKLL
Sbjct:  132 KWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLL 167          
The following BLAST results are available for this feature:
BLAST of CB610494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
GPX4_CITSI5.454e-1494.74Probable phospholipid hydroperoxide glutathione pe... [more]
GPX6_ARATH1.485e-1183.33Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_HELAN1.940e-1186.11Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_SPIOL2.533e-1183.33Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_TOBAC7.371e-1180.56Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_NICSY7.371e-1180.56Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_GOSHI7.371e-1180.56Probable phospholipid hydroperoxide glutathione pe... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0003_IaF_C12 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IaF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610494 ID=CB610494; Name=CB610494; organism=Citrus sinensis; type=EST; length=401bp
GGGCAAGTGGAACTTCCCCAAGTTCTTGGTGGATAAGGAGGGGAATGTTG
NNGAGCGTTATGCCCCCACCACTAGCCCTCTGAGCATTGAGAAGGATATA
AAGAAACTTCTGGAGACTGCTTAACCGCTGCTACAACTTGCATGATCAGC
TTCTTGCTAATAAAACTAGAGTATCATGCTGTAGAAGCACTCTGGTGGAA
ATATATGTTTAGCTTTGTCTCAATATCTGTAGACATATAATGAAGTTTCC
TAATGTCGAAGTAAATTCAGTTGATAAGTGCTTGGTTTGTATGTAATGAA
TGTTCCCAGTTTTTGTAATTCAAAATAAAAGGTGCTTGGTGAGACTCTAC
AGATGTCGTCGTGCCATTGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
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