CB610765

Overview
NameCB610765
Unique NameCB610765
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3763 contig Csv1_Contig3763:1..491. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610765 vs. ExPASy Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.066e-20
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 1
Query:   79 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLV 243
            MD+Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTL+
Sbjct:    1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLL 55          
BLAST of CB610765 vs. ExPASy Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.165e-19
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 1
Query:   79 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLV 243
            MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RFIMRNVKGPVREGD+LTL+
Sbjct:    1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLL 54          
BLAST of CB610765 vs. ExPASy Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.987e-19
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 1
Query:   79 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLV 243
            MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGDILTL+
Sbjct:    1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLL 54          
BLAST of CB610765 vs. ExPASy Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.474e-14
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 1
Query:   91 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLV 243
            IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTL+
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLL 59          
BLAST of CB610765 vs. ExPASy Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.474e-14
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 1
Query:   91 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLV 243
            IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTL+
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLL 59          
BLAST of CB610765 vs. ExPASy Swiss-Prot
Match: RS28_DROME (40S ribosomal protein S28 OS=Drosophila melanogaster GN=RpS28b PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.283e-14
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 1
Query:   79 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLV 243
            MD  +  A V+KV+GRTGS+GQ TQV+V+FL +QNR I+RNVKGPVREGDILTL+
Sbjct:    1 MDKPVVWARVMKVLGRTGSQGQCTQVKVEFLGEQNRQIIRNVKGPVREGDILTLL 55          
BLAST of CB610765 vs. ExPASy Swiss-Prot
Match: RS28_RAT (40S ribosomal protein S28 OS=Rattus norvegicus GN=Rps28 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.314e-14
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 1
Query:   91 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLV 243
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+LTL+
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLL 59          
BLAST of CB610765 vs. ExPASy Swiss-Prot
Match: RS28_PIG (40S ribosomal protein S28 OS=Sus scrofa GN=RPS28 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 7.314e-14
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 1
Query:   91 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLV 243
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+LTL+
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLL 59          
BLAST of CB610765 vs. ExPASy Swiss-Prot
Match: RS28_MOUSE (40S ribosomal protein S28 OS=Mus musculus GN=Rps28 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.314e-14
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 1
Query:   91 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLV 243
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+LTL+
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLL 59          
BLAST of CB610765 vs. ExPASy Swiss-Prot
Match: RS28_HUMAN (40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.314e-14
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 1
Query:   91 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLV 243
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+LTL+
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLL 59          
The following BLAST results are available for this feature:
BLAST of CB610765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RS28_MAIZE3.066e-2089.0940S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=... [more]
RS282_ARATH1.165e-1989.0940S ribosomal protein S28-2 OS=Arabidopsis thalian... [more]
RS281_ARATH1.987e-1989.0940S ribosomal protein S28-1 OS=Arabidopsis thalian... [more]
RS28_ICTPU1.474e-1474.5140S ribosomal protein S28 OS=Ictalurus punctatus G... [more]
RS28_DANRE1.474e-1474.5140S ribosomal protein S28 OS=Danio rerio GN=rps28 ... [more]
RS28_DROME3.283e-1469.0940S ribosomal protein S28 OS=Drosophila melanogast... [more]
RS28_RAT7.314e-1472.5540S ribosomal protein S28 OS=Rattus norvegicus GN=... [more]
RS28_PIG7.314e-1472.5540S ribosomal protein S28 OS=Sus scrofa GN=RPS28 P... [more]
RS28_MOUSE7.314e-1472.5540S ribosomal protein S28 OS=Mus musculus GN=Rps28... [more]
RS28_HUMAN7.314e-1472.5540S ribosomal protein S28 OS=Homo sapiens GN=RPS28... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IaF_B05 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IaF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610765 ID=CB610765; Name=CB610765; organism=Citrus sinensis; type=EST; length=513bp
GGGGCATTGCAAGAACTGCTGAAAGAAATTAGCAGCCGCTTCTGTCACCT
TCTCTCTCTTCTCGCCTCTTCGCTCAGAATGGATTCTCAGATTAAGCACG
CTGTGGTGGTGAAAGTCATGGGCCGCACTGGTTCAAGAGGACAGGTTACT
CAAGTGAGAGTCAAGTTTTTAGATGATCAGAACCGATTCATCATGAGGAA
TGTGAAGGGACCCGTTAGAGAAGGTGATATCCTCACTTTGGTCGAGTCTG
AGAGAGAAGCTAGGAGGCTCCGTTGAAGAGTCCATCTCTGGTCATACTAT
CTCAAACTTTTTGTTGGAAACTAGGGTTCATTACTGTTGTTTTTAGTAGG
CTAGTGATTGGCAATGTTATGAGTTTCACAACTTATTTTGAAGGTTTTCA
TATTAAGACTGGGTTTTGAGCCATGAATTATATGTTTTGGGATGTTTAAT
ATCGTTCTCTTTGAAATGGAGTTAAATTTGCTGTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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