CF417125

Overview
NameCF417125
Unique NameCF417125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7251 contig Csv1_Contig7251:1281..1888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 4.401e-68
Identity = 124/143 (86.71%), Postives = 140/143 (97.90%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIMS 431
            GKGRIL+EGERVALLGYG+AVQ+CLAA+++LES GL++TVADARFCKPLD ALIRSLAKSHEVL+TVE+GSIGGFGSHVVQF+ALDGLLDG +KWRP+VLPDRYIDHGSPADQLA+AGLTPSHIAATVFNILGQTREALE+M+
Sbjct:  577 GKGRILVEGERVALLGYGSAVQNCLAAASVLESRGLQVTVADARFCKPLDRALIRSLAKSHEVLVTVEKGSIGGFGSHVVQFMALDGLLDGKLKWRPIVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNILGQTREALEVMT 719          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 3.487e-65
Identity = 119/143 (83.22%), Postives = 133/143 (93.01%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIMS 431
            GKGR+L+EGERVALLGYG+AVQ CLAA++L+E HGL++TVADARFCKPLD  LIR LA SHEVL+TVEEGSIGGFGSHV QF+ALDGLLDG +KWRPLVLPDRYIDHGSPADQLA+AGLTPSHIAATVFN+LGQ REAL IM+
Sbjct:  574 GKGRVLLEGERVALLGYGSAVQYCLAAASLVERHGLKVTVADARFCKPLDQTLIRRLASSHEVLLTVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNVLGQAREALAIMT 716          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 8.039e-62
Identity = 116/139 (83.45%), Postives = 126/139 (90.65%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREAL 419
            GKGRIL EGERVALLGYG+AVQSCL A+ +LE  GL +TVADARFCKPLD ALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDG +KWRP+VLPDRYIDHG+PADQLA+AGL PSHIAAT  N++G  REAL
Sbjct:  578 GKGRILKEGERVALLGYGSAVQSCLGAAVMLEERGLNVTVADARFCKPLDRALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGKLKWRPMVLPDRYIDHGAPADQLAEAGLMPSHIAATALNLIGAPREAL 716          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BRUSU (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella suis GN=dxs PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.198e-38
Identity = 82/132 (62.12%), Postives = 96/132 (72.73%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 398
            GKGRI+ EG +VALL +GT +Q CLAA+  L + GL  TVADARF KPLDH LIR LA+ HEVL+ VEEG++GGFGSHV+QFLA DGLLD  +K R L LPD Y DHG P    A+AGL  + I  TVF  L
Sbjct:  496 GKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAAL 627          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BRUSI (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=dxs PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.198e-38
Identity = 82/132 (62.12%), Postives = 96/132 (72.73%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 398
            GKGRI+ EG +VALL +GT +Q CLAA+  L + GL  TVADARF KPLDH LIR LA+ HEVL+ VEEG++GGFGSHV+QFLA DGLLD  +K R L LPD Y DHG P    A+AGL  + I  TVF  L
Sbjct:  496 GKGRIVREGTKVALLSFGTRLQECLAAAEELGATGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAAL 627          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BRUC2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=dxs PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.198e-38
Identity = 82/132 (62.12%), Postives = 96/132 (72.73%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 398
            GKGRI+ EG +VALL +GT +Q CLAA+  L + GL  TVADARF KPLDH LIR LA+ HEVL+ VEEG++GGFGSHV+QFLA DGLLD  +K R L LPD Y DHG P    A+AGL  + I  TVF  L
Sbjct:  496 GKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAAL 627          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_RHILO (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium loti GN=dxs PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.057e-37
Identity = 81/138 (58.70%), Postives = 97/138 (70.29%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREA 416
            GKGR++ EG +VALL +GT +Q CL A+  L + GL  TVADARF KPLD  LIR LA+SHEVL+TVEEG+IGGF SHV+QFLA +GLL+  +K RPLVLPD + DH  P    A AGL  + I  TVF  L  T  A
Sbjct:  497 GKGRVVREGSKVALLSFGTRLQDCLIAAEELGAAGLSTTVADARFAKPLDEDLIRRLARSHEVLVTVEEGAIGGFASHVLQFLAHEGLLESGLKVRPLVLPDVFTDHAKPEKMYADAGLDAAGIVRTVFTALDHTARA 634          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BRUME (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella melitensis GN=dxs PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.057e-37
Identity = 82/132 (62.12%), Postives = 95/132 (71.97%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 398
            GKGRI+ EG +VALL +GT +Q CLAA+  L + GL  TVADARF KPLDH LIR LA+ HEVL+ VEEG++GGFGSHV+QFLA DGLLD   K R L LPD Y DHG P    A+AGL  + I  TVF  L
Sbjct:  496 GKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGFKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAAL 627          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BRUMB (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=dxs PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.057e-37
Identity = 82/132 (62.12%), Postives = 95/132 (71.97%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 398
            GKGRI+ EG +VALL +GT +Q CLAA+  L + GL  TVADARF KPLDH LIR LA+ HEVL+ VEEG++GGFGSHV+QFLA DGLLD   K R L LPD Y DHG P    A+AGL  + I  TVF  L
Sbjct:  496 GKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGFKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAAL 627          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_OCHA4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=dxs PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.381e-37
Identity = 84/139 (60.43%), Postives = 99/139 (71.22%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREAL 419
            GKGRI+ EG +VALL +GT +Q CLAA+  L + GL  TVADARF KPLDH LIR LA+ HEVL+ VEEG++GGF SHV+QFLA DGLLD  +K R L LPD Y DHG P    A+AGL  + I   VF  LG  REA+
Sbjct:  496 GKGRIVREGTKVALLSFGTRLQECLAAADELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFASHVLQFLATDGLLDRGLKVRALTLPDTYQDHGKPDAMYAEAGLDRTGIVHAVFAALG--REAV 632          
The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 386
Match NameE-valueIdentityDescription
DXS_CAPAN4.401e-6886.71Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ORYSJ3.487e-6583.22Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ARATH8.039e-6283.45Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_BRUSU6.198e-3862.121-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUSI6.198e-3862.121-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUC26.198e-3862.121-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_RHILO1.057e-3758.701-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_BRUME1.057e-3762.121-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUMB1.057e-3762.121-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_OCHA41.381e-3760.431-deoxy-D-xylulose-5-phosphate synthase OS=Ochroba... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-055 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bp
TTGGCAAAGGCAGGATACTGATTGAAGGTGAAAGAGTCGCACTCTTGGGC
TATGGTACAGCCGTTCAGAGCTGTTTAGCTGCTTCTGCTTTATTGGAATC
CCATGGGTTACGGCTGACTGTAGCTGATGCTCGATTCTGTAAACCACTGG
ATCATGCCCTCATTCGTAGCTTGGCAAAATCACATGAAGTTTTGATTACT
GTGGAGGAAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCT
CGCTCTCGATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTAC
TCCCCGATCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAA
GCTGGTCTTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGG
ACAGACAAGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATAC
ACAATTATTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGA
AGTTATATACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCAT
TGGNTTATTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCA
ACTTGATT
back to top