CF417220
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417220 vs. ExPASy Swiss-Prot
Match: RPAB2_CAEBR (Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Caenorhabditis briggsae GN=rpb-6 PE=3 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 1.183e-12 Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 1 Query: 334 GETDPLXIAMKELRERKIPFTIRRYLPDGSY 426 GETDPL IA KEL++R++P IRRYLPDGSY Sbjct: 95 GETDPLEIARKELKQRRVPIIIRRYLPDGSY 125 HSP 2 Score: 39.2762 bits (90), Expect = 1.183e-12 Identity = 24/60 (40.00%), Postives = 32/60 (53.33%), Query Frame = 3 Query: 216 ERSSSENFQVHD*IRSVPV----------------ILGTRALQISMNAPVMVELVGGDRP 347 + + ENF++ D ++VP +LGTRALQI+M APVMVEL G P Sbjct: 40 DNNVDENFELFDQGKAVPTSEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDP 99
BLAST of CF417220 vs. ExPASy Swiss-Prot
Match: RPAB2_CAEEL (Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Caenorhabditis elegans GN=rpb-6 PE=2 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 1.536e-12 Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 1 Query: 334 GETDPLXIAMKELRERKIPFTIRRYLPDGSY 426 GETDPL IA KEL++R+IP +RRYLPDGSY Sbjct: 94 GETDPLEIARKELKQRRIPIIVRRYLPDGSY 124 HSP 2 Score: 38.891 bits (89), Expect = 1.536e-12 Identity = 24/55 (43.64%), Postives = 30/55 (54.55%), Query Frame = 3 Query: 231 ENFQVHD*IRSVPV----------------ILGTRALQISMNAPVMVELVGGDRP 347 ENF++ D ++VP +LGTRALQI+M APVMVEL G P Sbjct: 44 ENFELFDQGKAVPTSEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDP 98 The following BLAST results are available for this feature:
BLAST of CF417220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 2
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417220 ID=CF417220; Name=CF417220; organism=Citrus sinensis; type=EST; length=427bpback to top |