CF417224

Overview
NameCF417224
Unique NameCF417224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: SSDH_ARATH (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=ALDH5F1 PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.317e-40
Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDMNR 272
            FKTEE+AI +ANDT AGLAAYIFTN++QR+WRV EALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDE+LEIKYVCLGDMNR
Sbjct:  439 FKTEEDAIRIANDTIAGLAAYIFTNSVQRSWRVFEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEYLEIKYVCLGDMNR 527          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: SSDH_ORYSJ (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Oryza sativa subsp. japonica GN=ALDH5F1 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.707e-39
Identity = 74/88 (84.09%), Postives = 85/88 (96.59%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDMN 269
            FKTEE+AI MANDTNAGLAAYIFT ++ R+WRVSEALEYGLVGVNEG+ISTEVAPFGGVKQSGLGREGSKYGMDE+LE+KY+C+G++N
Sbjct:  440 FKTEEDAIRMANDTNAGLAAYIFTKSIPRSWRVSEALEYGLVGVNEGIISTEVAPFGGVKQSGLGREGSKYGMDEYLELKYICMGNLN 527          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: GABD_ECOLI (Succinate-semialdehyde dehydrogenase [NADP+] OS=Escherichia coli (strain K12) GN=gabD PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.249e-27
Identity = 55/85 (64.71%), Postives = 69/85 (81.18%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLG 260
            FK E + I  ANDT  GLAAY +  +L R +RV EALEYG+VG+N G+IS EVAPFGG+K SGLGREGSKYG++++LEIKY+C+G
Sbjct:  397 FKDEADVIAQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYMCIG 481          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: SSDH_PONPY (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Pongo pygmaeus GN=ALDH5A1 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26
Identity = 56/87 (64.37%), Postives = 69/87 (79.31%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 266
            F TEEEAI +AN  + GLA Y ++ +  + WRV+E LE G+VGVNEGLIS+   PFGGVKQSGLGREGSKYG+DE+LE+KYVC G +
Sbjct:  449 FNTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLELKYVCYGGL 535          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: SSDH_PANTR (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Pan troglodytes GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.904e-26
Identity = 56/87 (64.37%), Postives = 69/87 (79.31%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 266
            F TEEEAI +AN  + GLA Y ++ +  + WRV+E LE G+VGVNEGLIS+   PFGGVKQSGLGREGSKYG+DE+LE+KYVC G +
Sbjct:  449 FDTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLELKYVCYGGL 535          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: SSDH_PANPA (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Pan paniscus GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.904e-26
Identity = 56/87 (64.37%), Postives = 69/87 (79.31%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 266
            F TEEEAI +AN  + GLA Y ++ +  + WRV+E LE G+VGVNEGLIS+   PFGGVKQSGLGREGSKYG+DE+LE+KYVC G +
Sbjct:  449 FDTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLELKYVCYGGL 535          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: SSDH_HYLLA (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Hylobates lar GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.904e-26
Identity = 56/87 (64.37%), Postives = 69/87 (79.31%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 266
            F TEEEAI +AN  + GLA Y ++ +  + WRV+E LE G+VGVNEGLIS+   PFGGVKQSGLGREGSKYG+DE+LE+KYVC G +
Sbjct:  449 FDTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLELKYVCYGGL 535          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: SSDH_HUMAN (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH5A1 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.904e-26
Identity = 56/87 (64.37%), Postives = 69/87 (79.31%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 266
            F TEEEAI +AN  + GLA Y ++ +  + WRV+E LE G+VGVNEGLIS+   PFGGVKQSGLGREGSKYG+DE+LE+KYVC G +
Sbjct:  449 FDTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLELKYVCYGGL 535          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: SSDH_GORGO (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Gorilla gorilla gorilla GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.904e-26
Identity = 56/87 (64.37%), Postives = 69/87 (79.31%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 266
            F TEEEAI +AN  + GLA Y ++ +  + WRV+E LE G+VGVNEGLIS+   PFGGVKQSGLGREGSKYG+DE+LE+KYVC G +
Sbjct:  449 FDTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLELKYVCYGGL 535          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: SSDH_RAT (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Aldh5a1 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 9.450e-26
Identity = 54/87 (62.07%), Postives = 68/87 (78.16%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 266
            F  EEEA+ +AN  + GLA Y ++ +  + WRV+E LE G+VGVNEGLIS+   PFGGVKQSGLGREGSKYG+DE+LE+KYVC G +
Sbjct:  437 FDKEEEAVAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLEVKYVCYGGL 523          
The following BLAST results are available for this feature:
BLAST of CF417224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
SSDH_ARATH2.317e-4089.89Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_ORYSJ5.707e-3984.09Succinate-semialdehyde dehydrogenase, mitochondria... [more]
GABD_ECOLI2.249e-2764.71Succinate-semialdehyde dehydrogenase [NADP+] OS=Es... [more]
SSDH_PONPY1.458e-2664.37Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_PANTR1.904e-2664.37Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_PANPA1.904e-2664.37Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_HYLLA1.904e-2664.37Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_HUMAN1.904e-2664.37Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_GORGO1.904e-2664.37Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_RAT9.450e-2662.07Succinate-semialdehyde dehydrogenase, mitochondria... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-154 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_H1 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417224 ID=CF417224; Name=CF417224; organism=Citrus sinensis; type=EST; length=709bp
TATGCTTCAAAACTGAGGAGGAAGCTATCCATATGGCCAATGATACCAAT
GCAGGGTTAGCTGCTTATATATTTACAAACAATCTTCAACGTACATGGCG
TGTCTCTGAAGCTCTTGAATATGGACTCGTCGGTGTTAATGAAGGATTAA
TTTCAACAGAGGTGGCTCCTTTTGGTGGTGTTAAACAATCTGGTCTTGGA
CGGGAAGGTTCAAAGTATGGGATGGATGAATTCCTGGAAATAAAATATGT
GTGCTTGGGAGACATGAACAGAAAATGATGGGCCAGTTGTGTACCTGTAT
GTTACCGGGCTTATGGAGAAAGAAGGAAGGAGCCTGTAGTACTGCCTTTG
AACTGTATTTTGAAGACGGATTGGAATAGTGTGAGCCTCAAGCGTTTGGA
TGTGGAGGTAGTAGTGAGCCATAGTTGGTTTGCTATTGATACCCCATGTA
CATAAATAAGTTTGCAAAATGGAACTTGAATGTCTAGTAGTGAGCCATAG
GTGGTTTGCTATTGATACCCCATGTACATAAATAAGTTTGCAAAATGGAA
CTTGNAATGTCTGGTGTCATAAAGATTTTGCCGTCAACACCCAAAACCTA
ATGGGAAAGAACTTTTCTTCTTTTGGTATCATTACATTTTCCCNCGGGGT
TATGTTTCTCTTGATCAGATATGAATCAAGATTCCATGGTATTTATAACC
CCCCATCTT
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