CF417326
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RK13_ARATH (50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana GN=RPL13 PE=1 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 2.795e-74 Identity = 143/226 (63.27%), Postives = 165/226 (73.01%), Query Frame = 1 Query: 4 MATLCTPTCVIFXXXXXXXXXXXXFKTLNTGTTISSSTTPFFGFSVASAKSTSP-----LNTKRSFKVRC----CQNLSLVPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 MA LC+ + VI + + ++ S +PF GFS+ + S N+KR +V+C SLVP NQRWMF++ E NGPDIWN TWYPKA+DH ++DK W+VVDATDKILGRLASTIA HIRGKNLA+YTPSVDMGA+VIVVNAEKVAVSGKKR QK+YRRHSGRPGGM ETFDQLQ RIPERI+EHAVRGMLPKGRLGR LF HLK Sbjct: 1 MAVLCSSSTVIL-------------SSSSVKSSGSERKSPFLGFSLTAISKPSVRVGIYANSKRGLQVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLK 213
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RK13_SPIOL (50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea GN=RPL13 PE=1 SV=1) HSP 1 Score: 259.225 bits (661), Expect = 1.343e-68 Identity = 134/194 (69.07%), Postives = 152/194 (78.35%), Query Frame = 1 Query: 97 TTISSSTTPFFGFSVA-SAKSTSPLNTK-----RSFKVRCCQNLSL--VPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 T + S P +VA SA+ ++ +TK R K + ++ VP +QRWMF E GPDIWN TWYPK+ADH +DK WYVVDATD ILGR+ASTIAIHIRGKNLA+YTPSVDMGA+VIVVNA+KVAVSGKKRTQK+YRRHSGRPGG+KEETFDQLQ RIPERIIEHAVRGMLPKGRLGR LF HLK Sbjct: 29 TPVLSFPRPTVAAAVAVSARKSTSASTKCTEEWRQLKEAVKKEFAIPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLK 222
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_ANAVT (50S ribosomal protein L13 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplM PE=3 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 2.160e-42 Identity = 83/112 (74.11%), Postives = 97/112 (86.61%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 ++ WYVVDATDK LGRLAS IA+ +RGKN A YTP +D G +VIVVNAEKVAV+GKKRTQK+YRRHSGRPGGMK ETF +LQ R+PERI+EHAV+GMLPK LG++LFT LK Sbjct: 13 ERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVVNAEKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQLFTKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_ANASP (50S ribosomal protein L13 OS=Anabaena sp. (strain PCC 7120) GN=rplM PE=3 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 6.284e-42 Identity = 82/112 (73.21%), Postives = 97/112 (86.61%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 ++ WYVVDATDK LGRLAS IA+ +RGKN A YTP +D G +VIVVNA+KVAV+GKKRTQK+YRRHSGRPGGMK ETF +LQ R+PERI+EHAV+GMLPK LG++LFT LK Sbjct: 13 ERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVVNAKKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQLFTKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_FREDI (50S ribosomal protein L13 OS=Fremyella diplosiphon GN=rplM PE=3 SV=2) HSP 1 Score: 168.318 bits (425), Expect = 3.119e-41 Identity = 79/112 (70.54%), Postives = 96/112 (85.71%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 ++ WY+VDATD+ LGRLAS IA+ +RGK A YTP +D G +VIV+NAEK+AV+GKKRTQK+YRRHSGRPGGMK ETF +LQ RIPERI+EHAV+GMLPK LG++LFT LK Sbjct: 13 EREWYIVDATDQRLGRLASEIAMVLRGKKKAEYTPHLDTGDFVIVINAEKIAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRIPERIVEHAVKGMLPKNSLGKQLFTKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_CYAP4 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplM PE=3 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 6.948e-41 Identity = 85/126 (67.46%), Postives = 98/126 (77.78%), Query Frame = 1 Query: 277 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 N T+ P + WYVVDAT++ LGRLA+ IA+ +RGK YTPS+D G +VIVVNAEKVAV+GKKRTQKIYRRHSGRPGGMK ETF +LQ R+PERIIEHAV+GMLPK LGR LFT LK Sbjct: 2 NKTYLPSTTS---LEPKWYVVDATEQHLGRLATQIAMILRGKTKPIYTPSMDTGDFVIVVNAEKVAVTGKKRTQKIYRRHSGRPGGMKTETFAKLQSRLPERIIEHAVKGMLPKNTLGRNLFTKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_THEEB (50S ribosomal protein L13 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplM PE=3 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.185e-40 Identity = 81/109 (74.31%), Postives = 93/109 (85.32%), Query Frame = 1 Query: 328 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 WYV+DA D+ LGRLA+ IA +RGKN A YTP +D G +VIV+NAEKV V+GKKR+QK+YRRHSGRPGGMK ETFDQLQ RIPERIIEHAV+GMLPK LGR+LFT LK Sbjct: 19 WYVIDAADQRLGRLAAEIARILRGKNKAIYTPHMDTGDFVIVINAEKVTVTGKKRSQKLYRRHSGRPGGMKIETFDQLQARIPERIIEHAVKGMLPKNSLGRKLFTKLK 127
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_MICAN (50S ribosomal protein L13 OS=Microcystis aeruginosa (strain NIES-843) GN=rplM PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.003e-39 Identity = 78/112 (69.64%), Postives = 95/112 (84.82%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 ++ WYV+DA D+ LGRLA+ IA+ +RGKN AT+TP +D G +VIV+NAEKV V+GKKR QK+YRR SGRPGGMK E+FD+LQ RIPERIIEHAV+GMLPK LGR+LFT LK Sbjct: 13 EQKWYVIDAADQRLGRLATEIAMILRGKNKATFTPHLDTGDFVIVINAEKVTVTGKKRQQKVYRRDSGRPGGMKVESFDKLQKRIPERIIEHAVKGMLPKNSLGRKLFTKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_CYAA5 (50S ribosomal protein L13 OS=Cyanothece sp. (strain ATCC 51142) GN=rplM PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 1.711e-39 Identity = 77/112 (68.75%), Postives = 94/112 (83.93%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 D+ WYV+DATD+ LGRLA +A +RGKN TYTP +D G +VI++NA+KVAV+G+K TQK+YRRHSGRPGGMK ETF++LQ RIPERIIE AV+GMLPK LGR+LFT LK Sbjct: 13 DQKWYVIDATDQRLGRLACEVAKILRGKNKPTYTPHMDTGDFVIIINADKVAVTGRKSTQKLYRRHSGRPGGMKIETFEKLQQRIPERIIEKAVKGMLPKNALGRQLFTKLK 124
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_CYAP8 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 8801) GN=rplM PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 2.235e-39 Identity = 76/112 (67.86%), Postives = 94/112 (83.93%), Query Frame = 1 Query: 319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654 D+ WYV+DA D+ LGRLAS +A +RGKN T+TP +D G +VI+VNAEKV V+GKK +QK+YRRHSGRPGGMK ETF++LQ R+PERI+EHAV+GMLPK LGR+LFT LK Sbjct: 13 DQKWYVIDAADQRLGRLASEVAQILRGKNKPTFTPHMDTGDFVIIVNAEKVVVTGKKSSQKLYRRHSGRPGGMKVETFEKLQARLPERIVEHAVKGMLPKNSLGRKLFTKLK 124 The following BLAST results are available for this feature:
BLAST of CF417326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417326 ID=CF417326; Name=CF417326; organism=Citrus sinensis; type=EST; length=654bpback to top |