CF417409

Overview
NameCF417409
Unique NameCF417409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417409_ssr68 microsatellite CF417409_ssr68:68..79. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11062 contig Csv1_Contig11062:217..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF417409 vs. ExPASy Swiss-Prot
Match: FTRV_MAIZE (Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.167e-18
Identity = 42/71 (59.15%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:  421 KIGAKVKVKVPLKVYHVPRVPEHDLSGMEGVLKQYVGVWKGKKISANMPYKVAFVTEIEG--RPVKFFAHL 627
            KIG +V+V  PL+VYHV + P+ D+ GMEGV+KQYV VWKGK+++AN P+KV F   +EG  +PV+FFAHL
Sbjct:   17 KIGRRVRVTAPLRVYHVLKAPDLDIQGMEGVVKQYVCVWKGKRVTANFPFKVEFELAVEGQPKPVRFFAHL 87
[Close]
BLAST of CF417409 vs. ExPASy Swiss-Prot
Match: FTRV_SPIOL (Ferredoxin-thioredoxin reductase, variable chain, chloroplastic OS=Spinacia oleracea GN=FTRV PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.092e-16
Identity = 50/107 (46.73%), Postives = 64/107 (59.81%), Query Frame = 1 
Query:  313 ISCEVAVKSNNSTASVGLEXXXXXXXXXXDDGFDESKIGAKVKVKVPLKVYHVPRVPEHDLS-GMEGVLKQYVGVWKGKKISANMPYKVAFVTEIEGR-PVKFFAHL 627
            I CEVA+KS++ST                    +  K+G KVKVK PLKVYHVP++PE +L+  M GV+KQYVG WKGK IS N P+KV +  ++  R  VK   HL
Sbjct:   60 ICCEVALKSDSSTGFDSSSSSPPEEDEELKKNLE--KVGCKVKVKSPLKVYHVPKLPEVELTPDMVGVIKQYVGFWKGKYISPNYPFKVEYRIDVPDRGSVKLVVHL 164
The following BLAST results are available for this feature:
BLAST of CF417409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FTRV_MAIZE1.167e-1859.15Ferredoxin-thioredoxin reductase, variable chain O... [more]
FTRV_SPIOL1.092e-1646.73Ferredoxin-thioredoxin reductase, variable chain, ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-339 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417409 ID=CF417409; Name=CF417409; organism=Citrus sinensis; type=EST; length=629bp
GTCCGTTGCCATCGTCTTAGCTCGCCTTAGCCACTGAGGCCTGAGATAGT
GGTTCAATAGAAAAATCAATAATAATAATAAAAAAAGAGAGTAAAGGTTG
GGTAATATCATTATTATTATATGATTATTTTGTGAGAATTAGCAGACGAG
TGAAAAGATAGATACACAGAAATCATGACTAGTACAAGTTTTGCTTTGTT
CTCGGCTACTTCTTCGTTGATAAATCGACGGCCACTTACGAATGCGTTTG
TCTCAGTTTCTTCATTTTCAGCTGCCAATTGTAGTGACAATGTTAATGTT
AACAAAAGAAGAATCTCCTGTGAAGTAGCTGTAAAATCCAACAATTCAAC
GGCATCCGTAGGACTAGAGAGCAGTCCATCTTCATCAGCATCAGCGTCGG
ATGATGGCTTTGATGAGTCTAAGATTGGTGCGAAGGTTAAGGTGAAGGTG
CCGTTGAAGGTTTACCATGTTCCTAGGGTTCCGGAGCATGATCTGTCTGG
CATGGAAGGTGTGCTCAAGCAATACGTCGGCGTTTGGAAAGGAAAGAAAA
TCTCAGCCAATATGCCTTATAAGGTAGCGTTTGTTACTGAAATTGAAGGC
CGTCCTGTCAAGTTCTTTGCACATCTCAG
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