CF417571
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417571 vs. ExPASy Swiss-Prot
Match: RS12_HORVU (40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1) HSP 1 Score: 214.542 bits (545), Expect = 3.437e-55 Identity = 101/123 (82.11%), Postives = 115/123 (93.50%), Query Frame = 3 Query: 126 LGEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKS 494 LGE MDLMTALQ+V++KS AH GL +GL E AK IEKHAAQLCVLAEDC+QPDYVKLVKALCA+HNV L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GEES+GLN+VQQ++KS Sbjct: 20 LGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEGLNIVQQYVKS 142
BLAST of CF417571 vs. ExPASy Swiss-Prot
Match: RS122_ARATH (40S ribosomal protein S12-2 OS=Arabidopsis thaliana GN=RPS12C PE=2 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 2.549e-50 Identity = 92/122 (75.41%), Postives = 109/122 (89.34%), Query Frame = 3 Query: 132 EAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKSH 497 E MD+ TAL++ +RKS A+GG+ RGLHE AK+IEK AQLCVLAEDCNQPDYVKLVKALCADH++ LLTVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGEE+ LN+V++H+ S+ Sbjct: 23 EDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144
BLAST of CF417571 vs. ExPASy Swiss-Prot
Match: RS121_ARATH (40S ribosomal protein S12-1 OS=Arabidopsis thaliana GN=RPS12A PE=2 SV=1) HSP 1 Score: 195.667 bits (496), Expect = 1.652e-49 Identity = 95/121 (78.51%), Postives = 106/121 (87.60%), Query Frame = 3 Query: 132 EAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKS 494 E MDLMTAL++ LRK+ A+GG+ RGLHE AK+IEK AQL VLAEDCNQPDYVKLVKALCADH V LLTVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+VVKDFGEE+ L++V +HI S Sbjct: 23 EDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIAS 143
BLAST of CF417571 vs. ExPASy Swiss-Prot
Match: RS12_PIG (40S ribosomal protein S12 OS=Sus scrofa GN=RPS12 PE=2 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 1.111e-37 Identity = 72/121 (59.50%), Postives = 93/121 (76.86%), Query Frame = 3 Query: 129 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 491 G MD+ TALQ VL+ +L H GLARG+ E AK ++K A LCVLA +C++P YVKLV+ALCA+H ++L+ V K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES +V++++ K Sbjct: 9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
BLAST of CF417571 vs. ExPASy Swiss-Prot
Match: RS12_HUMAN (40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3) HSP 1 Score: 156.377 bits (394), Expect = 1.111e-37 Identity = 72/121 (59.50%), Postives = 93/121 (76.86%), Query Frame = 3 Query: 129 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 491 G MD+ TALQ VL+ +L H GLARG+ E AK ++K A LCVLA +C++P YVKLV+ALCA+H ++L+ V K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES +V++++ K Sbjct: 9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
BLAST of CF417571 vs. ExPASy Swiss-Prot
Match: RS12_CHICK (40S ribosomal protein S12 OS=Gallus gallus GN=RPS12 PE=1 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 1.111e-37 Identity = 72/121 (59.50%), Postives = 93/121 (76.86%), Query Frame = 3 Query: 129 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 491 G MD+ TALQ VL+ +L H GLARG+ E AK ++K A LCVLA +C++P YVKLV+ALCA+H ++L+ V K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES +V++++ K Sbjct: 9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
BLAST of CF417571 vs. ExPASy Swiss-Prot
Match: RS12_BOVIN (40S ribosomal protein S12 OS=Bos taurus GN=RPS12 PE=2 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.111e-37 Identity = 72/121 (59.50%), Postives = 93/121 (76.86%), Query Frame = 3 Query: 129 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 491 G MD+ TALQ VL+ +L H GLARG+ E AK ++K A LCVLA +C++P YVKLV+ALCA+H ++L+ V K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES +V++++ K Sbjct: 9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
BLAST of CF417571 vs. ExPASy Swiss-Prot
Match: RS12_XENLA (40S ribosomal protein S12 OS=Xenopus laevis GN=rps12 PE=2 SV=2) HSP 1 Score: 152.525 bits (384), Expect = 1.604e-36 Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = 3 Query: 129 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 491 G MD+ TALQ VL+ +L H GLARG+ E AK ++K A LCVLA +C++P YVKLV+ALCA+ ++L+ V K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES +V++++ K Sbjct: 9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEPQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
BLAST of CF417571 vs. ExPASy Swiss-Prot
Match: RS12_RAT (40S ribosomal protein S12 OS=Rattus norvegicus GN=Rps12 PE=1 SV=2) HSP 1 Score: 152.525 bits (384), Expect = 1.604e-36 Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = 3 Query: 129 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 491 G MD+ TALQ VL+ +L H GLARG+ E AK ++K A LCVLA +C++P YVKLV+AL A+H ++L+ V K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES +V++++ K Sbjct: 9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALLAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
BLAST of CF417571 vs. ExPASy Swiss-Prot
Match: RS12_ORENI (40S ribosomal protein S12 OS=Oreochromis niloticus GN=rps12 PE=2 SV=3) HSP 1 Score: 152.525 bits (384), Expect = 1.604e-36 Identity = 71/122 (58.20%), Postives = 92/122 (75.41%), Query Frame = 3 Query: 129 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKS 494 G MD+ TAL VL+ +L H GLA G+ E AK ++K A LCVLA +C++P YVKLV+ALCA+H ++L+ V K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES +V++++ KS Sbjct: 9 GGVMDVNTALPEVLKTALIHDGLAPGIREAAKALDKRQAHLCVLAANCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKS 130 The following BLAST results are available for this feature:
BLAST of CF417571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 21
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417571 ID=CF417571; Name=CF417571; organism=Citrus sinensis; type=EST; length=626bpback to top |