CF503889
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAP_DICDI (Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 6.549e-31 Identity = 65/127 (51.18%), Postives = 87/127 (68.50%), Query Frame = 1 Query: 1 QRGYTDQMVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDI-DISQMSVLNNVDEQTVRSLNGCRV 378 ++GY +Q + A IFTFGSYRLG HGPG+DID LCVGP ++ R DFF L DIL E++E + DA VPV+ F GI IDL+YA ++L +PE++ D+ S L N+DE+++ SLNGCRV Sbjct: 115 KKGYPEQTASEVVAKIFTFGSYRLGVHGPGSDIDTLCVGPKHIMR-SDFFDDLSDILKVHPEITEFTTVKDAFVPVITMVFSGIPIDLIYAKLALTAIPEELNDLIDESFLKNIDEKSILSLNGCRV 240
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAP_YEAST (Poly(A) polymerase OS=Saccharomyces cerevisiae GN=PAP1 PE=1 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 7.241e-30 Identity = 62/126 (49.21%), Postives = 87/126 (69.05%), Query Frame = 1 Query: 1 QRGYTDQMVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSVLNNVDEQTVRSLNGCRV 378 ++ +D M DA IFT+GSYRLG HGPG+DID L V P +V+RE DFF + +L E +E+ E+ P+PDA VP++K KF GISIDL+ A + VP + +S ++L N+DE+ +R+LNG RV Sbjct: 69 KKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLLRNLDEKDLRALNGTRV 193
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAPOB_MOUSE (Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2) HSP 1 Score: 127.872 bits (320), Expect = 1.613e-29 Identity = 63/125 (50.40%), Postives = 84/125 (67.20%), Query Frame = 1 Query: 4 RGYTDQMVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSVLNNVDEQTVRSLNGCRV 378 R ++E+ IFTFGSYRLG H GADIDALCV P +V R DFF +D L EEV +L+ + +A VPV+K F GI ID+L+A ++L +PED+D+ S+L N+D + +RSLNGCRV Sbjct: 83 RNLPQAVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRN-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRV 206
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAP_SCHPO (Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe GN=pla1 PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 2.107e-29 Identity = 63/121 (52.07%), Postives = 90/121 (74.38%), Query Frame = 1 Query: 16 DQMVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSVLNNVDEQTVRSLNGCRV 378 ++M +A IFT+GSYRLG +GPG+DID L V P +VSR+ +FF L +L E EEV++L +PDA+VP++KFKF GISIDL++A +S+ VP D+++S ++L V+E+ V SLNG RV Sbjct: 73 EKMANEAGGKIFTYGSYRLGVYGPGSDIDTLVVVPKHVSRD-NFFQDLEPMLREREEVTDLAAVPDAYVPIIKFKFLGISIDLIFARLSVPRVPRDLELSDNNLLKGVEERCVLSLNGTRV 192
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAPOA_MOUSE (Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4) HSP 1 Score: 127.102 bits (318), Expect = 2.751e-29 Identity = 62/119 (52.10%), Postives = 83/119 (69.75%), Query Frame = 1 Query: 22 MVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSVLNNVDEQTVRSLNGCRV 378 ++E+ IFTFGSYRLG H GADIDALCV P +V R DFF +D L EEV +L+ + +A VPV+K F GI ID+L+A ++L +PED+D+ S+L N+D + +RSLNGCRV Sbjct: 89 VIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRV 206
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAPOA_HUMAN (Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4) HSP 1 Score: 127.102 bits (318), Expect = 2.751e-29 Identity = 62/119 (52.10%), Postives = 83/119 (69.75%), Query Frame = 1 Query: 22 MVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSVLNNVDEQTVRSLNGCRV 378 ++E+ IFTFGSYRLG H GADIDALCV P +V R DFF +D L EEV +L+ + +A VPV+K F GI ID+L+A ++L +PED+D+ S+L N+D + +RSLNGCRV Sbjct: 89 VIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRV 206
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAPOA_BOVIN (Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3) HSP 1 Score: 127.102 bits (318), Expect = 2.751e-29 Identity = 62/119 (52.10%), Postives = 83/119 (69.75%), Query Frame = 1 Query: 22 MVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSVLNNVDEQTVRSLNGCRV 378 ++E+ IFTFGSYRLG H GADIDALCV P +V R DFF +D L EEV +L+ + +A VPV+K F GI ID+L+A ++L +PED+D+ S+L N+D + +RSLNGCRV Sbjct: 89 VIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRV 206
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAPO1_XENLA (Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-A PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 3.594e-29 Identity = 61/119 (51.26%), Postives = 83/119 (69.75%), Query Frame = 1 Query: 22 MVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSVLNNVDEQTVRSLNGCRV 378 ++E+ IFTFG YRLG H GADIDALCV P +V R DFF +D L + EEV +L+ + +A VPV+K F GI ID+L+A ++L +PED+D+ S+L N+D + +RSLNGCRV Sbjct: 71 VIENVGGKIFTFGPYRLGVHTKGADIDALCVAPRHVDRS-DFFSSFYDKLKQQEEVKDLRSVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRV 188
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAP_CANAL (Poly(A) polymerase PAPalpha OS=Candida albicans GN=PAPALPHA PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 4.693e-29 Identity = 59/125 (47.20%), Postives = 89/125 (71.20%), Query Frame = 1 Query: 4 RGYTDQMVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSVLNNVDEQTVRSLNGCRV 378 + +D M +DA +FTFGSYRLG +GPG+DID L V P +V+R+ DFF + DI+ + E+ E+ +PDA+VP++K +F GISIDL+ A +++ VP D+ + ++L N+DE+ +RSLNG RV Sbjct: 69 KNMSDSMAQDAGGKVFTFGSYRLGVYGPGSDIDTLVVVPKHVTRD-DFFSVFADIIRKRPELEEIACVPDAYVPIIKLEFDGISIDLIMARLNIPRVPLDLTLDDKNLLKNLDEKDLRSLNGTRV 192
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAPOB_HUMAN (Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 6.130e-29 Identity = 62/119 (52.10%), Postives = 83/119 (69.75%), Query Frame = 1 Query: 22 MVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSVLNNVDEQTVRSLNGCRV 378 ++E+ IFTFGSYRLG H GADIDALCV PS+V R DFF + L EEV +L+ + +A VPV+K F GI ID+L+A ++L +PED+D+ S+L N+D + +RSLNGCRV Sbjct: 89 VIENVGGKIFTFGSYRLGVHTKGADIDALCVAPSHVDRS-DFFTSFYAKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRV 206 The following BLAST results are available for this feature:
BLAST of CF503889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CF503889 ID=CF503889; Name=CF503889; organism=Citrus sinensis; type=EST; length=408bpback to top |