CF504178

Overview
NameCF504178
Unique NameCF504178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig523 contig Csv1_Contig523:1..425. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504178 vs. ExPASy Swiss-Prot
Match: AP2_ARATH (Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 2.336e-60
Identity = 110/141 (78.01%), Postives = 115/141 (81.56%), Query Frame = 1
Query:    1 IEAPQPLKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGL 423
            +E  QPLKK          QYRGVTFYRRTGRWESHIWD GKQVYLGGFDT            IKFRG EADINF+I+DY+DDLKQM+NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGL
Sbjct:  112 VEPAQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIDDYDDDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGL 252          
BLAST of CF504178 vs. ExPASy Swiss-Prot
Match: TOE3_ARATH (AP2-like ethylene-responsive transcription factor TOE3 OS=Arabidopsis thaliana GN=TOE3 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.567e-56
Identity = 104/140 (74.29%), Postives = 109/140 (77.86%), Query Frame = 1
Query:    4 EAPQPLKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGL 423
            E   P+KK          QYRGVTFYRRTGRWESHIWD GKQVYLGGFDT            IKFRG +ADINF IEDY DDLKQM NLTKEEF+HVLRRQSTGFPRGSSKYRGVTLHKCGRWE+R+GQFL KKYVYLGL
Sbjct:   78 EISPPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFDIEDYLDDLKQMGNLTKEEFMHVLRRQSTGFPRGSSKYRGVTLHKCGRWESRLGQFLNKKYVYLGL 217          
BLAST of CF504178 vs. ExPASy Swiss-Prot
Match: RAP27_ARATH (Ethylene-responsive transcription factor RAP2-7 OS=Arabidopsis thaliana GN=RAP2-7 PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 2.589e-51
Identity = 94/132 (71.21%), Postives = 103/132 (78.03%), Query Frame = 1
Query:   10 PQPLKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKK 405
            P  +KK          QYRGVTFYRRTGRWESHIWD GKQVYLGGFDT            IKFRG +ADINF++ DYE+D+KQ+ NL+KEEFVH+LRRQSTGF RGSSKYRGVTLHKCGRWEARMGQFLGKK
Sbjct:  137 PAQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFTLGDYEEDMKQVQNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 268          
BLAST of CF504178 vs. ExPASy Swiss-Prot
Match: TOE2_ARATH (AP2-like ethylene-responsive transcription factor TOE2 OS=Arabidopsis thaliana GN=TOE2 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.205e-40
Identity = 81/129 (62.79%), Postives = 91/129 (70.54%), Query Frame = 1
Query:   13 QPLKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLG 399
            QP+KK          QYRGVTFYRRTGRWESHIWD GKQVYLGGFDT            +KFRG EADINF I DYE+DLKQM+NL+KEE V VLRRQS+GF R +S+Y+GV L K G W A+M Q  G
Sbjct:  145 QPVKKSRRGPRSKSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAVKFRGLEADINFVIGDYEEDLKQMANLSKEEVVQVLRRQSSGFSRNNSRYQGVALQKIGGWGAQMEQLHG 273          
BLAST of CF504178 vs. ExPASy Swiss-Prot
Match: SMZ_ARATH (AP2-like ethylene-responsive transcription factor SMZ OS=Arabidopsis thaliana GN=SMZ PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.755e-34
Identity = 68/119 (57.14%), Postives = 80/119 (67.23%), Query Frame = 1
Query:   19 LKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWE 375
            +KK          QYRGVTFYRRTGRWESHIWD GKQVYLGGFDT            IKFRG +ADINF ++DY  D+ +M NL K EFV  LRR+S  F RGSSKY+G+ L KC +++
Sbjct:  109 VKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAYAAARAYDRAAIKFRGLDADINFVVDDYRHDIDKMKNLNKVEFVQTLRRESASFGRGSSKYKGLALQKCTQFK 227          
BLAST of CF504178 vs. ExPASy Swiss-Prot
Match: SNZ_ARATH (AP2-like ethylene-responsive transcription factor SNZ OS=Arabidopsis thaliana GN=SNZ PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.329e-30
Identity = 59/94 (62.77%), Postives = 69/94 (73.40%), Query Frame = 1
Query:   61 YRGVTFYRRTGRWESHIWDSGKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYR 342
            YRGVTFYRRTGRWESHIWD GKQVYLGGFDT            I+FRG +ADINF ++DY+ D+++M NL+KEEFV  LRR S    RG SKY+
Sbjct:  109 YRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAYTAARAYDRAAIRFRGLQADINFIVDDYKQDIEKMKNLSKEEFVQSLRRASASLARGGSKYK 202          
BLAST of CF504178 vs. ExPASy Swiss-Prot
Match: WRI1_ARATH (Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana GN=WRI1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.528e-27
Identity = 62/131 (47.33%), Postives = 82/131 (62.60%), Query Frame = 1
Query:   61 YRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL-HKCGRWEARMGQFLGKKYVYLG 420
            YRGVT +R TGR+E+H+WD           GKQVYLG +D+            +K+ G +  +NF  E Y  +L++M  +TKEE++  LRRQS+GF RG SKYRGV   H  GRWEAR+G+  G KY+YLG
Sbjct:   66 YRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGKQVYLGAYDSEEAAAHTYDLAALKYWGPDTILNFPAETYTKELEEMQRVTKEEYLASLRRQSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLG 196          
BLAST of CF504178 vs. ExPASy Swiss-Prot
Match: ANT_ARATH (AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana GN=ANT PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 2.607e-27
Identity = 60/132 (45.45%), Postives = 86/132 (65.15%), Query Frame = 1
Query:   58 QYRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL-HKCGRWEARMGQFLGKKYVYLG 420
            QYRGVT +R TGR+E+H+WD+          G+QVYLGG+D             +K+ G     NFS E+Y+ +++ M N+T++E+V  LRR+S+GF RG+S YRGVT  H+ GRW+AR+G+  G K +YLG
Sbjct:  283 QYRGVTRHRWTGRYEAHLWDNSFKKEGHSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHTNFSAENYQKEIEDMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLG 414          
BLAST of CF504178 vs. ExPASy Swiss-Prot
Match: AIL1_ARATH (AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana GN=AIL1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.607e-27
Identity = 58/132 (43.94%), Postives = 87/132 (65.91%), Query Frame = 1
Query:   58 QYRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL-HKCGRWEARMGQFLGKKYVYLG 420
            QYRGVT +R TGR+E+H+WD+          G+QVYLGG+D             +K+ G    +NF + +YE ++++++N+ ++EFV +LRR S+GF RG+S YRGVT  H+ GRW+AR+G+  G K +YLG
Sbjct:  223 QYRGVTRHRWTGRYEAHLWDNSCKKEGQTRRGRQVYLGGYDEEEKAARAYDLAALKYWGPTTHLNFPLSNYEKEIEELNNMNRQEFVAMLRRNSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLG 354          
BLAST of CF504178 vs. ExPASy Swiss-Prot
Match: AIL5_ARATH (AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana GN=AIL5 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 4.446e-27
Identity = 60/131 (45.80%), Postives = 85/131 (64.89%), Query Frame = 1
Query:   61 YRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL-HKCGRWEARMGQFLGKKYVYLG 420
            YRGVT +R TGR+E+H+WD+          G+QVYLGG+D             +K+ G     NF I +YE +L++M ++T++EFV  LRR+S+GF RG+S YRGVT  H+ GRW+AR+G+  G K +YLG
Sbjct:  204 YRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYESELEEMKHMTRQEFVASLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLG 334          
The following BLAST results are available for this feature:
BLAST of CF504178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
AP2_ARATH2.336e-6078.01Floral homeotic protein APETALA 2 OS=Arabidopsis t... [more]
TOE3_ARATH1.567e-5674.29AP2-like ethylene-responsive transcription factor ... [more]
RAP27_ARATH2.589e-5171.21Ethylene-responsive transcription factor RAP2-7 OS... [more]
TOE2_ARATH1.205e-4062.79AP2-like ethylene-responsive transcription factor ... [more]
SMZ_ARATH3.755e-3457.14AP2-like ethylene-responsive transcription factor ... [more]
SNZ_ARATH7.329e-3062.77AP2-like ethylene-responsive transcription factor ... [more]
WRI1_ARATH1.528e-2747.33Ethylene-responsive transcription factor WRI1 OS=A... [more]
ANT_ARATH2.607e-2745.45AP2-like ethylene-responsive transcription factor ... [more]
AIL1_ARATH2.607e-2743.94AP2-like ethylene-responsive transcription factor ... [more]
AIL5_ARATH4.446e-2745.80AP2-like ethylene-responsive transcription factor ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-666 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504178 ID=CF504178; Name=CF504178; organism=Citrus sinensis; type=EST; length=425bp
ATTGAAGCTCCTCAGCCCCTGAAAAAAAGCAGGCGTGGACCCAGGTCAAG
GAGTTCCCAGTATAGAGGTGTCACCTTTTACAGAAGAACTGGAAGATGGG
AATCTCATATATGGGATTCTGGGAAACAAGTTTATCTAGGTGGATTTGAC
ACTGCACATGCAGCTGCTCGTGCTTATGATAGGGCAGCTATCAAGTTCCG
GGGAGCGGAGGCAGACATAAACTTTAGTATAGAAGATTATGAGGATGACT
TGAAACAGATGAGCAACTTAACCAAGGAAGAGTTTGTACATGTACTTCGC
CGACAAAGCACCGGTTTCCCCAGAGGAAGCTCCAAATATAGAGGAGTTAC
TTTGCACAAATGTGGAAGATGGGAAGCTCGAATGGGCCAATTTTTAGGCA
AAAAGTACGTTTATTTGGGCTTGTT
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