CF504261 | Citrus Genome Database

Overview


Name	CF504261
Unique Name	CF504261
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	413

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig11875	contig	Csv1_Contig11875:121..532.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.178e-59
Identity = 95/116 (81.90%), Postives = 100/116 (86.21%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RIVMELFAD TPRTAENFRALCTGEKG G+SGKPLHYK SSFHRVIPGFMCQ            ESIYG+KFADENF+KKHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKH+
Sbjct:   19 RIVMELFADTTPRTAENFRALCTGEKGTGRSGKPLHYKDSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHV 134

HSP 2 Score: 43.1282 bits (100), Expect = 4.178e-59
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKVGSS 413
            VFGQVVEGMDVVKAIEKVGSS
Sbjct:  135 VFGQVVEGMDVVKAIEKVGSS 155

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.454e-57
Identity = 94/116 (81.03%), Postives = 101/116 (87.07%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+VMELFAD TP+TAENFRALCTGEKGVGK GKPLHYKGS+FHRVIPGFMCQ            ESIYG+KF DENFVKKHTGPGILSMANAGPGTNGSQFF+CTAKTEWL+GKH+
Sbjct:   19 RVVMELFADTTPKTAENFRALCTGEKGVGKMGKPLHYKGSTFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFNDENFVKKHTGPGILSMANAGPGTNGSQFFICTAKTEWLNGKHV 134

HSP 2 Score: 36.5798 bits (83), Expect = 6.454e-57
Identity = 17/21 (80.95%), Postives = 18/21 (85.71%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKVGSS 413
            VFGQVVEGMDV+K  E VGSS
Sbjct:  135 VFGQVVEGMDVIKKAEAVGSS 155

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 3.448e-55
Identity = 92/116 (79.31%), Postives = 100/116 (86.21%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RIVMEL+AD TPRTAENFRALCTGEKGVG+SGKPLHYKGS+FHRVIP FMCQ            ESIYG+KFADENF+K+HTGPGILSMANAG GTNGSQFF+CT KTEWLDGKH+
Sbjct:   19 RIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQGGDFTAGNGTGAESIYGAKFADENFIKRHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHV 134

HSP 2 Score: 34.2686 bits (77), Expect = 3.448e-55
Identity = 15/20 (75.00%), Postives = 19/20 (95.00%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG+V+EGM+VV+ IEKVGS
Sbjct:  135 VFGKVIEGMNVVRDIEKVGS 154

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 8.306e-54
Identity = 86/116 (74.14%), Postives = 96/116 (82.76%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            +IVMEL+ D TP+TAENFRALCTGEKGVG+SGKPLH+KGSSFHRVIP FMCQ            ESIYG+KF DENF +KHTGPGILSMANAG  TNGSQFF+CT KT+WLDGKH+
Sbjct:   20 KIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHV 135

HSP 2 Score: 41.5874 bits (96), Expect = 8.306e-54
Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKVGSS 413
            VFGQVVEG+DVVKAIEK+GSS
Sbjct:  136 VFGQVVEGLDVVKAIEKIGSS 156

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.083e-53
Identity = 87/116 (75.00%), Postives = 94/116 (81.03%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RIVMEL+ D TPRTAENFRALCTGEKGVG +GKPLH+KGS FHRVIP FMCQ            ESIYGSKF DENF +KHTGPGILSMANAG  TNGSQFF+CT KT+WLDGKH+
Sbjct:   19 RIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHV 134

HSP 2 Score: 41.9726 bits (97), Expect = 1.083e-53
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKVGSS 413
            VFGQVVEG+DVVKAIEKVGSS
Sbjct:  135 VFGQVVEGLDVVKAIEKVGSS 155

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.127e-53
Identity = 89/116 (76.72%), Postives = 95/116 (81.90%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RIVMEL+AD TP TAENFRALCTGE+G+GK GKPLHYKGSSFHRVIP FMCQ            ESIYGSKF DENF+KKHTGPGILSMANAG  TNGSQFF+CT KT WLDGKH+
Sbjct:   20 RIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHRVIPKFMCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHV 135

HSP 2 Score: 35.039 bits (79), Expect = 3.127e-53
Identity = 16/20 (80.00%), Postives = 19/20 (95.00%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFGQVVEG++VV+ IEKVGS
Sbjct:  136 VFGQVVEGLNVVRDIEKVGS 155

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 6.929e-53
Identity = 87/116 (75.00%), Postives = 94/116 (81.03%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RI MELFAD TP TAENFRALCTGEKG+GK GKPLH+KGS FHRVIPGFMCQ            ESIYG+KF DENF+KKHTG GILSMAN+GP TNGSQFF+CT KT WLDGKH+
Sbjct:   19 RIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIFHRVIPGFMCQGGDFTAKNGTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHV 134

HSP 2 Score: 38.891 bits (89), Expect = 6.929e-53
Identity = 18/20 (90.00%), Postives = 20/20 (100.00%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFGQVV+G+DVVKAIEKVGS
Sbjct:  135 VFGQVVKGLDVVKAIEKVGS 154

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 1.178e-52
Identity = 87/116 (75.00%), Postives = 93/116 (80.17%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            RIVMEL+AD  P TAENFRALCTGE+G+GKSGKPLHYKGS+FHRVIP FMCQ            ESIYG KF DENFVKKHTGPGILSM NAG  TNGSQFF+CT KT WLDGKH+
Sbjct:   19 RIVMELYADTVPETAENFRALCTGERGIGKSGKPLHYKGSAFHRVIPKFMCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFFICTEKTSWLDGKHV 134

HSP 2 Score: 38.1206 bits (87), Expect = 1.178e-52
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFGQVVEGMDVV+ IEKVGS
Sbjct:  135 VFGQVVEGMDVVRDIEKVGS 154

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CYPH_ALLCE (Peptidyl-prolyl cis-trans isomerase OS=Allium cepa GN=CYP PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.614e-52
Identity = 86/113 (76.11%), Postives = 93/113 (82.30%), Query Frame = 2

Query:   11 MELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            MELF DV P+TAENFRALCTGEKG+G   KPLHYKGSSFHRVIPGFMCQ            ESIYG+KF DENF+KKHTGPG+LSMANAGPGTNGSQFF+CT KT WLDGKH+
Sbjct:    1 MELFQDVVPQTAENFRALCTGEKGMGDR-KPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFKDENFIKKHTGPGVLSMANAGPGTNGSQFFICTEKTAWLDGKHV 112

HSP 2 Score: 40.4318 bits (93), Expect = 2.614e-52
Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFGQVVEGMDVV+AIEKVGS
Sbjct:  113 VFGQVVEGMDVVRAIEKVGS 132

[Close]

BLAST of CF504261 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 2.174e-51
Identity = 87/116 (75.00%), Postives = 95/116 (81.90%), Query Frame = 2

Query:    2 RIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHI 349
            R+VMELFADVTPRTA NFRALCTGE G+GK+GK LHYKGS+FHR+IPGFMCQ            ESIYGSKF DENF  KHTGPGILSMAN+GP TNGSQFF+CT KT WLDGKH+
Sbjct:   19 RVVMELFADVTPRTANNFRALCTGENGIGKAGKALHYKGSAFHRIIPGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHV 134

HSP 2 Score: 31.187 bits (69), Expect = 2.174e-51
Identity = 14/20 (70.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:  351 VFGQVVEGMDVVKAIEKVGS 410
            VFG+VV+G +VVKA+E VGS
Sbjct:  135 VFGKVVDGYNVVKAMEDVGS 154

The following BLAST results are available for this feature:

BLAST of CF504261 vs. ExPASy Swiss-Prot

BLAST of CF504261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220


Match Name	E-value	Identity	Description
CYPH_CATRO	4.178e-59	81.90	Peptidyl-prolyl cis-trans isomerase OS=Catharanthu...	[more]
CYPH_SOLLC	6.454e-57	81.03	Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc...	[more]
CYPH_LUPLU	3.448e-55	79.31	Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut...	[more]
CP19B_ARATH	8.306e-54	74.14	Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara...	[more]
CP18C_ARATH	1.083e-53	75.00	Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara...	[more]
CP19A_ARATH	3.127e-53	76.72	Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara...	[more]
CP18D_ARATH	6.929e-53	75.00	Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Ara...	[more]
CYPH_BRANA	1.178e-52	75.00	Peptidyl-prolyl cis-trans isomerase OS=Brassica na...	[more]
CYPH_ALLCE	2.614e-52	76.11	Peptidyl-prolyl cis-trans isomerase OS=Allium cepa...	[more]
CP19C_ARATH	2.174e-51	75.00	Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_119000-750 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_C08 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504261 ID=CF504261; Name=CF504261; organism=Citrus sinensis; type=EST; length=413bp
CAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGAGA
ACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCGTCGGCAAGTCCGGCAAG
CCTCTCCACTACAAAGGCTCGTCCTTCCACCGTGTGATCCCCGGATTCAT
GTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAATCAA
TCTACGGCTCGAAATTCGCCGATGAGAACTTCGTGAAGAAGCACACCGGC
CCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATCTCA
GTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACATTT
GTGTTCGGTCAGGTCGTCGAAGGGATGGACGTCGTCAAGGCCATCGAGAA
AGTGGGGTCCAGC