CF504298

Overview
NameCF504298
Unique NameCF504298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504298_ssr50 microsatellite CF504298_ssr50:50..61. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4194 contig Csv1_Contig4194:28..540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504298 vs. ExPASy Swiss-Prot
Match: RS172_ARATH (40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3)

HSP 1 Score: 231.876 bits (590), Expect = 1.360e-60
Identity = 118/128 (92.19%), Postives = 123/128 (96.09%), Query Frame = 1
Query:   76 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMIAP 459
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD SG+  VEPQ  +AP
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEPQQAMAP 128          
BLAST of CF504298 vs. ExPASy Swiss-Prot
Match: RS173_ARATH (40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 3.958e-60
Identity = 116/131 (88.55%), Postives = 125/131 (95.42%), Query Frame = 1
Query:   76 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMIAPPVF 468
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIK D++KVDKETL+MLA+LGMSDI+G+ +VE Q  +AP VF
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQVETQQAMAPAVF 131          
BLAST of CF504298 vs. ExPASy Swiss-Prot
Match: RS174_ARATH (40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3)

HSP 1 Score: 229.95 bits (585), Expect = 5.169e-60
Identity = 117/128 (91.41%), Postives = 122/128 (95.31%), Query Frame = 1
Query:   76 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMIAP 459
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD  G+  VEPQ  +AP
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEPQQAMAP 128          
BLAST of CF504298 vs. ExPASy Swiss-Prot
Match: RS171_ARATH (40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=1 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 1.152e-59
Identity = 118/132 (89.39%), Postives = 124/132 (93.94%), Query Frame = 1
Query:   76 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMIAP-PVF 468
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD  G+  V+PQ  +AP P F
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDPQQAMAPIPAF 132          
BLAST of CF504298 vs. ExPASy Swiss-Prot
Match: RS17_SOLLC (40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3)

HSP 1 Score: 223.787 bits (569), Expect = 3.704e-58
Identity = 116/133 (87.22%), Postives = 125/133 (93.98%), Query Frame = 1
Query:   76 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVE--VEPQSMIAPPVF 468
            MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTD I+VDKETLDML+ALGMSD+ G+V+   EPQ++ A P +
Sbjct:    1 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVKQAAEPQAVAALPSY 133          
BLAST of CF504298 vs. ExPASy Swiss-Prot
Match: RS17B_SCHPO (40S ribosomal protein S17-B OS=Schizosaccharomyces pombe GN=rps17b PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.324e-39
Identity = 80/118 (67.80%), Postives = 99/118 (83.90%), Query Frame = 1
Query:   76 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLV 429
            MGRVRTKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKRIQ+GPVRGIS KLQEEERER+  +VP+ S ++ D+I VD++T DML ALG   I  +V
Sbjct:    1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSIPTVV 118          
BLAST of CF504298 vs. ExPASy Swiss-Prot
Match: RS17_THEPA (40S ribosomal protein S17 OS=Theileria parva GN=RPS17 PE=3 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 2.949e-39
Identity = 75/112 (66.96%), Postives = 98/112 (87.50%), Query Frame = 1
Query:   76 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMS 411
            MGRVRTKTVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+RIQKGPVRGISLKLQEEERERRMD++P++S ++   I+VD++T DML  L +S
Sbjct:    1 MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS 112          
BLAST of CF504298 vs. ExPASy Swiss-Prot
Match: RS17_THEAN (40S ribosomal protein S17 OS=Theileria annulata GN=RPS17 PE=2 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 2.949e-39
Identity = 75/112 (66.96%), Postives = 98/112 (87.50%), Query Frame = 1
Query:   76 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMS 411
            MGRVRTKTVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+RIQKGPVRGISLKLQEEERERRMD++P++S ++   I+VD++T DML  L +S
Sbjct:    1 MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS 112          
BLAST of CF504298 vs. ExPASy Swiss-Prot
Match: RS17_BOVIN (40S ribosomal protein S17 OS=Bos taurus GN=RPS17 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.030e-39
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = 1
Query:   76 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 441
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLDNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122          
BLAST of CF504298 vs. ExPASy Swiss-Prot
Match: RS17_PIG (40S ribosomal protein S17 OS=Sus scrofa GN=RPS17 PE=2 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 6.569e-39
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = 1
Query:   76 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 441
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122          
The following BLAST results are available for this feature:
BLAST of CF504298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS172_ARATH1.360e-6092.1940S ribosomal protein S17-2 OS=Arabidopsis thalian... [more]
RS173_ARATH3.958e-6088.5540S ribosomal protein S17-3 OS=Arabidopsis thalian... [more]
RS174_ARATH5.169e-6091.4140S ribosomal protein S17-4 OS=Arabidopsis thalian... [more]
RS171_ARATH1.152e-5989.3940S ribosomal protein S17-1 OS=Arabidopsis thalian... [more]
RS17_SOLLC3.704e-5887.2240S ribosomal protein S17 OS=Solanum lycopersicum ... [more]
RS17B_SCHPO1.324e-3967.8040S ribosomal protein S17-B OS=Schizosaccharomyces... [more]
RS17_THEPA2.949e-3966.9640S ribosomal protein S17 OS=Theileria parva GN=RP... [more]
RS17_THEAN2.949e-3966.9640S ribosomal protein S17 OS=Theileria annulata GN... [more]
RS17_BOVIN5.030e-3963.1140S ribosomal protein S17 OS=Bos taurus GN=RPS17 P... [more]
RS17_PIG6.569e-3963.1140S ribosomal protein S17 OS=Sus scrofa GN=RPS17 P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-787 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504298 ID=CF504298|Name=CF504298|organism=Citrus sinensis|type=EST|length=513bp
TCTTGACATCTCAAGCTCTTCTGCTTCACCGTCTTTGTCTTCTTCAAGAC
AGCAGCAGCAGCTTCTTAAACTGAAATGGGTCGTGTTCGTACCAAGACCG
TGAAGAAGTCCTCTCGCCAGGTGATTGAGAGGTACTACTCAAGAATGACA
CTGGACTTCCATACCAACAAGAAGATTTTGGAGGAGGTTGCTATCATCCC
CTCGAAGAGGCTGCGTAACAAAATTGCTGGGTTCTCAACCCATTTGATGA
AGAGGATTCAGAAGGGTCCAGTTCGTGGAATCTCCCTTAAATTGCAGGAA
GAGGAGCGCGAACGCCGCATGGACTTTGTGCCTGATGAGTCAGCTATTAA
GACTGATGAAATTAAGGTTGACAAGGAAACCTTGGATATGCTTGCTGCTC
TTGGCATGTCTGACATTTCTGGGCTTGTTGAAGTTGAGCCACAGAGCATG
ATTGCTCCTCCAGTTTTTGGTCGGGGTGGTGGCAGGAGGTACTGAGTTAA
TTGAGGCTTTGTG
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