CF504347

Overview
NameCF504347
Unique NameCF504347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9537 contig Csv1_Contig9537:476..835. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HAT4_ARATH (Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.700e-36
Identity = 65/82 (79.27%), Postives = 70/82 (85.37%), Query Frame = 2
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSKDQSAILEE+FK+H+TLNP          GLR RQVEVWFQNRRARTKLKQTEVDCEFL+RCCENLTEENRRLQKE
Sbjct:  129 KKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLRRCCENLTEENRRLQKE 210          

HSP 2 Score: 37.3502 bits (85), Expect = 2.700e-36
Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 3
Query:    3 SSVSGKRSEREPNGDELEMERACSRGISDEEDGDTFKKE 119
            SS +GKRSERE + D        SRGISD+EDGD  +K+
Sbjct:   97 SSSTGKRSEREEDTDPQG-----SRGISDDEDGDNSRKK 130          
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HAT2_ARATH (Homeobox-leucine zipper protein HAT2 OS=Arabidopsis thaliana GN=HAT2 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 4.420e-33
Identity = 62/82 (75.61%), Postives = 65/82 (79.27%), Query Frame = 2
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSKDQSA LEE+FKEHNTLNP           L  RQVEVWFQNRRARTKLKQTEVDCE+LKRC E LTEENRRLQKE
Sbjct:  130 KKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLQKE 211          

HSP 2 Score: 35.8094 bits (81), Expect = 4.420e-33
Identity = 22/51 (43.14%), Postives = 31/51 (60.78%), Query Frame = 3
Query:    3 SSVSGKRSERE----------PNGDELEMERACSRGISDEED--GDTFKKE 119
            S++SGKRSERE           + DE+  +R  SRG SDEE+  G+T +K+
Sbjct:   81 STISGKRSEREGISGTGVGSGDDHDEITPDRGYSRGTSDEEEDGGETSRKK 131          
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HAT1_ARATH (Homeobox-leucine zipper protein HAT1 OS=Arabidopsis thaliana GN=HAT1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.809e-32
Identity = 61/82 (74.39%), Postives = 67/82 (81.71%), Query Frame = 2
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSKDQSA+LE++FKEHNTLNP          GL  RQVEVWFQNRRARTKLKQTEVDCE+LKRC E LTEENRRL+KE
Sbjct:  135 KKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKE 216          

HSP 2 Score: 31.9574 bits (71), Expect = 2.809e-32
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 3
Query:    3 SSVSGKR--SEREPN-----GDELE--MERACSRGISDEED---GDTFKKE 119
            S+VSGKR  +ERE       GD+L+  ++R+ SRG SDEE+   G+T +K+
Sbjct:   86 STVSGKRRSTEREGTSGGGCGDDLDITLDRSSSRGTSDEEEDYGGETCRKK 136          
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSJ (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.006e-31
Identity = 65/82 (79.27%), Postives = 69/82 (84.15%), Query Frame = 2
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSKDQSA+LE+SF+EH TLNP          GLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCE LTEENRRLQKE
Sbjct:   82 KKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKE 163          
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSI (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.006e-31
Identity = 65/82 (79.27%), Postives = 69/82 (84.15%), Query Frame = 2
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSKDQSA+LE+SF+EH TLNP          GLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCE LTEENRRLQKE
Sbjct:   82 KKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKE 163          
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HAT14_ARATH (Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 3.822e-31
Identity = 64/82 (78.05%), Postives = 69/82 (84.15%), Query Frame = 2
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSKDQSA LE+SFKEH+TLNP           LRPRQVEVWFQNRRARTKLKQTEVDCE+LKRCCE+LTEENRRLQKE
Sbjct:  190 KKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKE 271          
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSJ (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.519e-31
Identity = 64/82 (78.05%), Postives = 68/82 (82.93%), Query Frame = 2
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSK+QSA LEESFKEH+TLNP           LRPRQVEVWFQNRRARTKLKQTEVDCE+LKRCCE LTEENRRLQKE
Sbjct:  177 KKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKE 258          
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSI (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.519e-31
Identity = 64/82 (78.05%), Postives = 68/82 (82.93%), Query Frame = 2
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSK+QSA LEESFKEH+TLNP           LRPRQVEVWFQNRRARTKLKQTEVDCE+LKRCCE LTEENRRLQKE
Sbjct:   90 KKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKE 171          
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSJ (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica GN=HOX27 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.477e-30
Identity = 63/82 (76.83%), Postives = 67/82 (81.71%), Query Frame = 2
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSK+QSA LEESFKEH+TLNP           LRPRQVEVWFQNRRARTKLKQTEVDCE+LKRCCE LTEENRRL KE
Sbjct:  174 KKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKE 255          
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSI (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica GN=HOX27 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 2.477e-30
Identity = 63/82 (76.83%), Postives = 67/82 (81.71%), Query Frame = 2
Query:  116 RSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 361
            + LRLSK+QSA LEESFKEH+TLNP           LRPRQVEVWFQNRRARTKLKQTEVDCE+LKRCCE LTEENRRL KE
Sbjct:  174 KKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKE 255          
The following BLAST results are available for this feature:
BLAST of CF504347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
HAT4_ARATH2.700e-3679.27Homeobox-leucine zipper protein HAT4 OS=Arabidopsi... [more]
HAT2_ARATH4.420e-3375.61Homeobox-leucine zipper protein HAT2 OS=Arabidopsi... [more]
HAT1_ARATH2.809e-3274.39Homeobox-leucine zipper protein HAT1 OS=Arabidopsi... [more]
HOX17_ORYSJ1.006e-3179.27Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HOX17_ORYSI1.006e-3179.27Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HAT14_ARATH3.822e-3178.05Homeobox-leucine zipper protein HAT14 OS=Arabidops... [more]
HOX11_ORYSJ6.519e-3178.05Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX11_ORYSI6.519e-3178.05Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX27_ORYSJ2.477e-3076.83Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX27_ORYSI2.477e-3076.83Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-836 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504347 ID=CF504347; Name=CF504347; organism=Citrus sinensis; type=EST; length=362bp
TTTCGAGCGTTAGCGGCAAGAGAAGCGAGCGGGAACCTAATGGAGATGAG
CTCGAAATGGAGAGAGCTTGCTCTCGTGGTATCAGCGACGAAGAGGATGG
TGACACCTTCAAGAAAGAAGCCTGAGACTTTCTAAAGATCAGTCAGCCAT
TCTTGAAGAGAGCTTCAAAGAGCACAACACTCTCAACCCAAAGCAAAAGT
TGGCGTTGGCAAAGCAGCTTGGTCTCAGACCTAGACAGGTGGAAGTGTGG
TTCCAGAACAGAAGGGCAAGGACCAAATTGAAGCAAACTGAGGTTGACTG
CGAATTCTTGAAGAGATGCTGTGAGAATCTGACGGAGGAGAACAGGCGGT
TGCAGAAAGAAG
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