CF504514

Overview
NameCF504514
Unique NameCF504514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length402
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5830 contig Csv1_Contig5830:12..413. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504514 vs. ExPASy Swiss-Prot
Match: BPS1_ARATH (Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 8.927e-41
Identity = 78/114 (68.42%), Postives = 93/114 (81.58%), Query Frame = 3 
Query:   60 MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAF 401
            M+RPQDP R FFPFGNPF+ +S K S LS KL+ LL +FE  LA  + KL+PK+K DIL +SWM+ AMESLCETHN IK LIT+LELPVSDW++KW+DVYLDISV LLD+C AF
Sbjct:    1 MARPQDPPRGFFPFGNPFKNLSSKNSVLSSKLLPLLNNFETNLASSISKLVPKEKSDILTVSWMKQAMESLCETHNGIKTLITDLELPVSDWEDKWVDVYLDISVKLLDLCNAF 114
[Close]
BLAST of CF504514 vs. ExPASy Swiss-Prot
Match: U496D_ORYSJ (UPF0496 protein 4 OS=Oryza sativa subsp. japonica GN=Os10g0513300 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.380e-33
Identity = 69/113 (61.06%), Postives = 83/113 (73.45%), Query Frame = 3 
Query:   60 MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIA 398
            MSR     R FFP GNPFR+M P G+ LS KL  LLA +E+ LA  LRKL P+   D+L LSWMRLA++ L E H  I +LIT+LELPVSDWD+KW+D+YL+ SV LLDICIA
Sbjct:    1 MSRAHGSPRSFFPVGNPFRVMFPGGAHLSRKLQELLASYEDALALSLRKLKPEAASDVLTLSWMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDICIA 113
[Close]
BLAST of CF504514 vs. ExPASy Swiss-Prot
Match: U496D_ORYSI (UPF0496 protein 4 OS=Oryza sativa subsp. indica GN=OsI_033149 PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 1.380e-33
Identity = 69/113 (61.06%), Postives = 83/113 (73.45%), Query Frame = 3 
Query:   60 MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIA 398
            MSR     R FFP GNPFR+M P G+ LS KL  LLA +E+ LA  LRKL P+   D+L LSWMRLA++ L E H  I +LIT+LELPVSDWD+KW+D+YL+ SV LLDICIA
Sbjct:    1 MSRAHGSPRSFFPVGNPFRVMFPGGAHLSRKLQELLASYEDALALSLRKLKPEAASDVLTLSWMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDICIA 113
The following BLAST results are available for this feature:
BLAST of CF504514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BPS1_ARATH8.927e-4168.42Protein BPS1, chloroplastic OS=Arabidopsis thalian... [more]
U496D_ORYSJ1.380e-3361.06UPF0496 protein 4 OS=Oryza sativa subsp. japonica ... [more]
U496D_ORYSI1.380e-3361.06UPF0496 protein 4 OS=Oryza sativa subsp. indica GN... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-003 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504514 ID=CF504514; Name=CF504514; organism=Citrus sinensis; type=EST; length=402bp
CTAACGCGTCTGCGAAATTTCCTAAGATTTTCGAGTACTGATTTCGCAAA
TCCATCAAAATGAGTCGCCCCCAGGATCCACACCGTCCTTTCTTCCCATT
TGGAAATCCTTTTCGGATGATGTCCCCCAAAGGTTCTCGTTTGTCTCCCA
AGCTTGTATCTCTGTTGGCTGATTTTGAGGAGACCTTGGCAGAGAGGCTG
AGAAAACTTATGCCGAAAGACAAGGATGATATCCTCAACTTATCATGGAT
GAGACTGGCAATGGAGTCACTTTGTGAGACTCACAATGTCATAAAAGACC
TTATAACTGAGTTGGAGCTTCCTGTAAGTGACTGGGATGAGAAATGGATA
GACGTGTACTTAGACATCAGTGTAAACTTGCTTGATATATGCATTGCTTT
TA
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