CF504563 | Citrus Genome Database

Overview


Name	CF504563
Unique Name	CF504563
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	497

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig242	contig	Csv1_Contig242:9..504.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 2.804e-52
Identity = 102/138 (73.91%), Postives = 108/138 (78.26%), Query Frame = 1

Query:   82 RTNPTQSPAFAAVSPIPRSESTMSG*RRKASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            +  P     +    P P+      G ++K     P    LVSWEKENVSSEALEAARIACNKYM KYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV+IGQVLLSVRCKD NSHHAQE
Sbjct:   13 KNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLSVRCKDGNSHHAQE 150

HSP 2 Score: 115.161 bits (287), Expect = 1.713e-25
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 3

Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFPFCVH
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 51

[Close]

BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 3.100e-51
Identity = 101/138 (73.19%), Postives = 108/138 (78.26%), Query Frame = 1

Query:   82 RTNPTQSPAFAAVSPIPRSESTMSG*RRKASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            +  P     F    P P+      G ++K     P    LVSWEKENVSSEALEAARIACNKYM K+AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD+NSH+AQE
Sbjct:   13 KNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHNAQE 150

HSP 2 Score: 116.316 bits (290), Expect = 7.689e-26
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 3

Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 51

[Close]

BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 6.906e-51
Identity = 102/138 (73.91%), Postives = 106/138 (76.81%), Query Frame = 1

Query:   82 RTNPTQSPAFAAVSPIPRSESTMSG*RRKASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            +  P     F    P P+      G +RK     P    LVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD NS+HAQE
Sbjct:   13 KNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNSNHAQE 150

HSP 2 Score: 115.161 bits (287), Expect = 1.713e-25
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 3

Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVH
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVH 51

[Close]

BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL101_ORYSJ (60S ribosomal protein L10-1 OS=Oryza sativa subsp. japonica GN=SC34 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 3.790e-49
Identity = 98/138 (71.01%), Postives = 106/138 (76.81%), Query Frame = 1

Query:   82 RTNPTQSPAFAAVSPIPRSESTMSG*RRKASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            +  P     +    P P+      G ++K     P    LVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+E
Sbjct:   13 KNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEE 150

HSP 2 Score: 114.005 bits (284), Expect = 3.816e-25
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 3

Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFP+CVH
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVH 51

[Close]

BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL101_ORYSI (60S ribosomal protein L10-1 OS=Oryza sativa subsp. indica GN=SC34 PE=2 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 3.790e-49
Identity = 98/138 (71.01%), Postives = 106/138 (76.81%), Query Frame = 1

Query:   82 RTNPTQSPAFAAVSPIPRSESTMSG*RRKASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            +  P     +    P P+      G ++K     P    LVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+E
Sbjct:   13 KNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEE 150

HSP 2 Score: 114.005 bits (284), Expect = 3.816e-25
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 3

Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFP+CVH
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVH 51

[Close]

BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 4.949e-49
Identity = 97/124 (78.23%), Postives = 102/124 (82.26%), Query Frame = 1

Query:  124 PIPRSESTMSG*RRKASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            P P+      G +RK     P    LVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++ HHAQE
Sbjct:   27 PDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQE 150

HSP 2 Score: 110.538 bits (275), Expect = 4.219e-24
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 3

Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFP+CVH
Sbjct:    1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVH 51

[Close]

BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL101_ARATH (60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 4.949e-49
Identity = 97/124 (78.23%), Postives = 102/124 (82.26%), Query Frame = 1

Query:  124 PIPRSESTMSG*RRKASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            P P+      G +RK     P    LVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++ HHAQE
Sbjct:   27 PDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQE 150

HSP 2 Score: 111.694 bits (278), Expect = 1.894e-24
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 3

Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVH
Sbjct:    1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVH 51

[Close]

BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_MAIZE (60S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.440e-48
Identity = 97/138 (70.29%), Postives = 104/138 (75.36%), Query Frame = 1

Query:   82 RTNPTQSPAFAAVSPIPRSESTMSG*RRKASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            +  P     +    P P+      G +RK     P    LVSWE+ENVSSEALEAARI CNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKD+N+ HA E
Sbjct:   13 KNKPCPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWERENVSSEALEAARIVCNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNAAHASE 150

HSP 2 Score: 109.383 bits (272), Expect = 9.399e-24
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 3

Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYRQIKNKP PKSR+CRGVPDPKIRIYDVGMK+KGVDEFP+CVH
Sbjct:    1 MGRRPARCYRQIKNKPCPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVH 51

[Close]

BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL103_ARATH (60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 9.334e-48
Identity = 96/124 (77.42%), Postives = 101/124 (81.45%), Query Frame = 1

Query:  124 PIPRSESTMSG*RRKASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            P P+      G +RK     P    LVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++  HAQE
Sbjct:   27 PDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDNHGVHAQE 150

HSP 2 Score: 111.694 bits (278), Expect = 1.894e-24
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 3

Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVH
Sbjct:    1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVH 51

[Close]

BLAST of CF504563 vs. ExPASy Swiss-Prot
Match: RL10_PINTA (60S ribosomal protein L10 OS=Pinus taeda GN=RPL10 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 2.716e-47
Identity = 94/138 (68.12%), Postives = 105/138 (76.09%), Query Frame = 1

Query:   82 RTNPTQSPAFAAVSPIPRSESTMSG*RRKASTSSPSAFTLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQE 495
            +  P     +    P P+      G +++     P    LVSWEKENVSSEALEA RIACNKYM K+AGKD FHLRVRVHPFHVLR NKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVR +D++S+HAQE
Sbjct:   13 KNKPYPKSRYCRGVPDPKIRIFDVGAKKRLVDEFPFCVHLVSWEKENVSSEALEAGRIACNKYMVKFAGKDGFHLRVRVHPFHVLRSNKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRSRDNHSNHAQE 150

HSP 2 Score: 106.301 bits (264), Expect = 7.957e-23
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 3

Query:   45 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVH 197
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRI+DVG KK+ VDEFPFCVH
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGAKKRLVDEFPFCVH 51

The following BLAST results are available for this feature:

BLAST of CF504563 vs. ExPASy Swiss-Prot

BLAST of CF504563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91


Match Name	E-value	Identity	Description
RL10_VITRI	2.804e-52	73.91	60S ribosomal protein L10 OS=Vitis riparia GN=RPL1...	[more]
RL10_EUPES	3.100e-51	73.19	60S ribosomal protein L10 OS=Euphorbia esula GN=RP...	[more]
RL10_SOLME	6.906e-51	73.91	60S ribosomal protein L10 OS=Solanum melongena GN=...	[more]
RL101_ORYSJ	3.790e-49	71.01	60S ribosomal protein L10-1 OS=Oryza sativa subsp....	[more]
RL101_ORYSI	3.790e-49	71.01	60S ribosomal protein L10-1 OS=Oryza sativa subsp....	[more]
RL102_ARATH	4.949e-49	78.23	60S ribosomal protein L10-2 OS=Arabidopsis thalian...	[more]
RL101_ARATH	4.949e-49	78.23	60S ribosomal protein L10-1 OS=Arabidopsis thalian...	[more]
RL10_MAIZE	1.440e-48	70.29	60S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=...	[more]
RL103_ARATH	9.334e-48	77.42	60S ribosomal protein L10-3 OS=Arabidopsis thalian...	[more]
RL10_PINTA	2.716e-47	68.12	60S ribosomal protein L10 OS=Pinus taeda GN=RPL10 ...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_120000-052 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_G03 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504563 ID=CF504563; Name=CF504563; organism=Citrus sinensis; type=EST; length=497bp
GAGCAGAAAGAGAGAATAGCTGAGACCGAACACGAACGCTCGCCATGGGA
AGAAGACCGGCAAGGTGTTACCGCCAAATCAAGAACAAACCCTACCCAAA
GTCCCGCTTTTGCCGCGGTGTCCCCGATCCCAAGATCAGAATCTACGATG
TCGGGATGAAGAAGAAAGGCGTCGACGAGTTCCCCTTCTGCGTTCACCCT
CGTCAGTTGGGAGAAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGCCC
GTATCGCTTGCAACAAGTACATGGCCAAGTACGCCGGCAAGGATGCTTTC
CATTTGCGAGTGAGGGTGCACCCCTTCCATGTTCTGCGTATTAACAAGAT
GCTTTCGTGTGCTGGGGCTGATAGGCTCCAGACTGGAATGAGGGGTGCTT
TTGGAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGGCAGGTCTTG
CTTTCTGTCCGTTGCAAGGATAGTAACAGCCACCATGCTCAGGAGGC