CF504635 | Citrus Genome Database

Overview


Name	CF504635
Unique Name	CF504635
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	746

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig12395	contig	Csv1_Contig12395:39..786.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF504635 vs. ExPASy Swiss-Prot
Match: DCAM_IPONI (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil GN=SAMDC PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.428e-28
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 2

Query:  482 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLQMN 664
            MAL  SAIGFEGYEKRLE+SFFE G+F+DP GRGLR+LSK QLD++LKPAECTIVSSL  N
Sbjct:    1 MALSTSAIGFEGYEKRLEISFFEAGIFSDPEGRGLRALSKEQLDKVLKPAECTIVSSLSNN 61

HSP 2 Score: 41.2022 bits (95), Expect = 8.428e-28
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 3

Query:  693 SLFVYPYKVIIKTCGTTK 746
            SLFVYPYK+IIKTCGTTK
Sbjct:   72 SLFVYPYKIIIKTCGTTK 89

HSP 3 Score: 21.1718 bits (43), Expect = 8.428e-28
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1

Query:  652 VANEHLDSYVLSE 690
            ++N  +DSYVLSE
Sbjct:   58 LSNNEVDSYVLSE 70

[Close]

BLAST of CF504635 vs. ExPASy Swiss-Prot
Match: DCAM_NICSY (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.208e-27
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 2

Query:  482 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSL 655
            MALPVSAIGFEG+EKRLE+SFFEPG+FADP G+GLRSLSK QLDEIL PAECTIV SL
Sbjct:    3 MALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDSL 60

HSP 2 Score: 38.1206 bits (87), Expect = 2.208e-27
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 3

Query:  693 SLFVYPYKVIIKTCGTTK 746
            SLFVY YK+IIKTCGTTK
Sbjct:   74 SLFVYSYKIIIKTCGTTK 91

[Close]

BLAST of CF504635 vs. ExPASy Swiss-Prot
Match: DCAM_IPOBA (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea batatas GN=SAMDC PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.106e-27
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 2

Query:  482 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLQMN 664
            MAL  SAIGFEGYE RLE+SFFE G+F+DP GRGLR+LSK QLD++LKPAECTIVSSL  N
Sbjct:    1 MALSTSAIGFEGYENRLEISFFEAGIFSDPEGRGLRALSKEQLDKVLKPAECTIVSSLSNN 61

HSP 2 Score: 41.2022 bits (95), Expect = 3.106e-27
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 3

Query:  693 SLFVYPYKVIIKTCGTTK 746
            SLFVYPYK+IIKTCGTTK
Sbjct:   72 SLFVYPYKIIIKTCGTTK 89

HSP 3 Score: 21.1718 bits (43), Expect = 3.106e-27
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1

Query:  652 VANEHLDSYVLSE 690
            ++N  +DSYVLSE
Sbjct:   58 LSNNEVDSYVLSE 70

[Close]

BLAST of CF504635 vs. ExPASy Swiss-Prot
Match: DCAM_CATRO (S-adenosylmethionine decarboxylase proenzyme OS=Catharanthus roseus GN=SAMDC PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.033e-27
Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 2

Query:  482 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLQMNIL 670
            MALP SAIGFEGYEKRLE+SFFE   FADP G+GLR+L+K Q+DEIL+PAECTIV SL    L
Sbjct:    1 MALPASAIGFEGYEKRLEISFFESSFFADPDGKGLRALNKSQIDEILEPAECTIVDSLSNQYL 63

HSP 2 Score: 41.2022 bits (95), Expect = 4.033e-27
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 3

Query:  693 SLFVYPYKVIIKTCGTTK 746
            SLFVYPYK+IIKTCGTTK
Sbjct:   72 SLFVYPYKIIIKTCGTTK 89

HSP 3 Score: 23.8682 bits (50), Expect = 4.033e-27
Identity = 9/13 (69.23%), Postives = 13/13 (100.00%), Query Frame = 1

Query:  652 VANEHLDSYVLSE 690
            ++N++LDSYVLSE
Sbjct:   58 LSNQYLDSYVLSE 70

[Close]

BLAST of CF504635 vs. ExPASy Swiss-Prot
Match: DCAM_TOBAC (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 8.255e-27
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 2

Query:  485 ALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSL 655
            ALPVSAIGFEG+EKRLE+SFFEPG+FADP G+GLRSLSK QLDEIL PAECTIV SL
Sbjct:    4 ALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDSL 60

HSP 2 Score: 38.1206 bits (87), Expect = 8.255e-27
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 3

Query:  693 SLFVYPYKVIIKTCGTTK 746
            SLFVY YK+IIKTCGTTK
Sbjct:   74 SLFVYSYKIIIKTCGTTK 91

[Close]

BLAST of CF504635 vs. ExPASy Swiss-Prot
Match: DCAM_SOLTU (S-adenosylmethionine decarboxylase proenzyme OS=Solanum tuberosum GN=SAMDC PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.153e-25
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 2

Query:  479 KMALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSL 655
            +M LPVSAIGFEG+EKRLE+SF EPG+FADP G+GLRSLSK QLDEIL PAECTIV +L
Sbjct:    2 EMDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNL 60

HSP 2 Score: 38.1206 bits (87), Expect = 1.153e-25
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 3

Query:  693 SLFVYPYKVIIKTCGTTK 746
            SLFVY YK+IIKTCGTTK
Sbjct:   74 SLFVYSYKIIIKTCGTTK 91

[Close]

BLAST of CF504635 vs. ExPASy Swiss-Prot
Match: DCAM_DATST (S-adenosylmethionine decarboxylase proenzyme OS=Datura stramonium GN=SAMDC PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.541e-25
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 2

Query:  479 KMALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSL 655
            +M LPVSAIGFEG+EKRLE+SF EPG+F+DP G+GLRSLSK QLDEIL PAECTIV +L
Sbjct:    2 EMDLPVSAIGFEGFEKRLEISFVEPGLFSDPNGKGLRSLSKAQLDEILGPAECTIVDNL 60

HSP 2 Score: 38.1206 bits (87), Expect = 2.541e-25
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 3

Query:  693 SLFVYPYKVIIKTCGTTK 746
            SLFVY YK+IIKTCGTTK
Sbjct:   74 SLFVYSYKIIIKTCGTTK 91

[Close]

BLAST of CF504635 vs. ExPASy Swiss-Prot
Match: DCAM_SOLCI (S-adenosylmethionine decarboxylase proenzyme OS=Solanum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.307e-25
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 2

Query:  482 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSL 655
            M LPVSAIGFEG+EKRLE+SF EPG+FADP G+GLRSL+K QLDEIL PAECTIV +L
Sbjct:    1 MDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLTKAQLDEILGPAECTIVDNL 58

HSP 2 Score: 38.1206 bits (87), Expect = 3.307e-25
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 3

Query:  693 SLFVYPYKVIIKTCGTTK 746
            SLFVY YK+IIKTCGTTK
Sbjct:   72 SLFVYSYKIIIKTCGTTK 89

[Close]

BLAST of CF504635 vs. ExPASy Swiss-Prot
Match: DCAM_VICFA (S-adenosylmethionine decarboxylase proenzyme OS=Vicia faba GN=SAMDC PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.389e-25
Identity = 44/56 (78.57%), Postives = 51/56 (91.07%), Query Frame = 2

Query:  488 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSL 655
            + VSAIGFEG+EKRLE+SF +PG+F+DP GRGLRSL+K QLDEIL PAECTIVSSL
Sbjct:    1 MAVSAIGFEGFEKRLEISFSDPGLFSDPQGRGLRSLTKSQLDEILAPAECTIVSSL 56

HSP 2 Score: 38.1206 bits (87), Expect = 3.389e-25
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 3

Query:  693 SLFVYPYKVIIKTCGTTK 746
            SLFVY YK+IIKTCGTTK
Sbjct:   70 SLFVYAYKIIIKTCGTTK 87

HSP 3 Score: 23.8682 bits (50), Expect = 3.389e-25
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 1

Query:  652 VANEHLDSYVLSE 690
            +ANE +DSYVLSE
Sbjct:   56 LANEDVDSYVLSE 68

[Close]

BLAST of CF504635 vs. ExPASy Swiss-Prot
Match: DCAM_PEA (S-adenosylmethionine decarboxylase proenzyme OS=Pisum sativum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.705e-25
Identity = 44/56 (78.57%), Postives = 51/56 (91.07%), Query Frame = 2

Query:  488 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSL 655
            + VSAIGFEG+EKRLE+SF +PG+F+DP GRGLRSL+K QLDEIL PAECTIVSSL
Sbjct:    1 MAVSAIGFEGFEKRLEISFSDPGLFSDPQGRGLRSLTKSQLDEILAPAECTIVSSL 56

HSP 2 Score: 37.3502 bits (85), Expect = 5.705e-25
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 3

Query:  693 SLFVYPYKVIIKTCGTTK 746
            SLFVY YK+IIKTCGTTK
Sbjct:   70 SLFVYAYKLIIKTCGTTK 87

HSP 3 Score: 23.8682 bits (50), Expect = 5.705e-25
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 1

Query:  652 VANEHLDSYVLSE 690
            +ANE +DSYVLSE
Sbjct:   56 LANEDVDSYVLSE 68

The following BLAST results are available for this feature:

BLAST of CF504635 vs. ExPASy Swiss-Prot

BLAST of CF504635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24


Match Name	E-value	Identity	Description
DCAM_IPONI	8.428e-28	78.69	S-adenosylmethionine decarboxylase proenzyme OS=Ip...	[more]
DCAM_NICSY	2.208e-27	86.21	S-adenosylmethionine decarboxylase proenzyme OS=Ni...	[more]
DCAM_IPOBA	3.106e-27	77.05	S-adenosylmethionine decarboxylase proenzyme OS=Ip...	[more]
DCAM_CATRO	4.033e-27	73.02	S-adenosylmethionine decarboxylase proenzyme OS=Ca...	[more]
DCAM_TOBAC	8.255e-27	85.96	S-adenosylmethionine decarboxylase proenzyme OS=Ni...	[more]
DCAM_SOLTU	1.153e-25	79.66	S-adenosylmethionine decarboxylase proenzyme OS=So...	[more]
DCAM_DATST	2.541e-25	77.97	S-adenosylmethionine decarboxylase proenzyme OS=Da...	[more]
DCAM_SOLCI	3.307e-25	79.31	S-adenosylmethionine decarboxylase proenzyme OS=So...	[more]
DCAM_VICFA	3.389e-25	78.57	S-adenosylmethionine decarboxylase proenzyme OS=Vi...	[more]
DCAM_PEA	5.705e-25	78.57	S-adenosylmethionine decarboxylase proenzyme OS=Pi...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_120000-124 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_E11 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504635 ID=CF504635; Name=CF504635; organism=Citrus sinensis; type=EST; length=746bp
GTTTTGTGAAACAGAGTGAAAAATCAACCCTTCTTTAATCCTCAAGGAAT
TTTATTATTTTCTTGGTCTCTGAATCGAGGGTTTTGCTTCTTGGTTTAGT
GGGTTTGTTTTCGTTATATTATCTGAGCAAGGCTGAATGATCTAATGGAG
TCAAAAGGTGGTAAGAAGAAGTCTAGCAGTAGTTCCTTATTCTACGAAGC
TCCTCTTGGTTACAGCATTGAAGACGTTCGACCTCACGGTGGCATAAAGA
AGTTCAGATCAGCTGCATACTCAAACTGCGTCCGCAAACCATCCTGAGAT
CGTCCAATTTGTCCCATACCCCCCCAAAAAAAAGCTCACTACTACTGCAA
TTTTAATTTTTTTTAGTTTTAGCCGTCTTAATACTGCAATTTACTTGGCC
TATTTCTTTTTCGACTTCCCTCGTTCTCTCGTTCTGCCCTCTTTGCTCTT
TGCAATTGTCATTTGTTTTCTGTAAGGCAAGATGGCCTTGCCAGTCTCTG
CAATTGGATTTGAAGGTTATGAAAAGAGGCTTGAAGTTTCCTTTTTTGAG
CCTGGTGTCTTTGCTGATCCTGGAGGTAGGGGCCTCCGCTCTCTGTCAAA
ACATCAATTGGATGAAATACTGAAACCTGCGGAATGCACAATTGTTTCTT
CGTTGCAAATGAACATCTTGATTCATATGTCCTCTCAGAATAAGCCTCTT
TGTGTACCCTTACAAAGTTATTATCAAAACTTGTGGGACTACCAAG