CF509788

Overview
NameCF509788
Unique NameCF509788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length318
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11804 contig Csv1_Contig11804:750..1068. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_ARATH (3-isopropylmalate dehydratase OS=Arabidopsis thaliana GN=IIL1 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.245e-50
Identity = 96/105 (91.43%), Postives = 101/105 (96.19%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGK+LLKVPPT+RF+LDGEMP YL AKDLILQIIGEISVAGATYK+MEF GTT+E LSMEERMTLCNMVVEAGGK
Sbjct:  196 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKILLKVPPTMRFILDGEMPSYLQAKDLILQIIGEISVAGATYKTMEFSGTTIESLSMEERMTLCNMVVEAGGK 300          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_WOLSU (3-isopropylmalate dehydratase large subunit OS=Wolinella succinogenes GN=leuC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.013e-29
Identity = 57/105 (54.29%), Postives = 79/105 (75.24%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G FATG+G+TD  + + TGK   KVPP++R V  G++ +++  KDLIL+II +I V GA YK++EF G T+E+LSM++R +LCNM +EAG K
Sbjct:  119 IGADSHTCTHGALGAFATGMGSTDLAYAMITGKNWFKVPPSIRVVFKGKLQEHVYGKDLILEIIRQIGVDGALYKALEFQGDTIEQLSMDDRFSLCNMAIEAGAK 223          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_HALOH (3-isopropylmalate dehydratase large subunit OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=leuC PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.854e-29
Identity = 58/105 (55.24%), Postives = 75/105 (71.43%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G FATG+G+TD    + TG    KVP T++FV +GE+  ++  KDLIL  IG+I V GA Y++MEF G T+E LSM+ RMT+ NM +EAGGK
Sbjct:  120 IGADSHTCTYGALGAFATGVGSTDMAAAMATGYTWFKVPSTIQFVYNGELKPWVSGKDLILYTIGDIGVDGALYRAMEFTGETIENLSMDNRMTISNMAIEAGGK 224          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_METJA (Isopropylmalate/citramalate isomerase large subunit OS=Methanocaldococcus jannaschii GN=leuC PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.026e-28
Identity = 58/105 (55.24%), Postives = 77/105 (73.33%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GAFG FATGIG+TD   V  TGK+  KVP T+ F + G++  Y+ +KD+IL IIGE+ V GATYK+ +F G TV+++S+  RMT+ NM +E GGK
Sbjct:  119 VGADSHTCTHGAFGAFATGIGSTDMAHVFATGKLWFKVPETIYFNITGDLQPYVTSKDVILSIIGEVGVDGATYKACQFGGETVKKMSIASRMTMTNMAIEMGGK 223          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC1_PYRAB (3-isopropylmalate dehydratase large subunit 1 OS=Pyrococcus abyssi GN=leuC1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.026e-28
Identity = 56/105 (53.33%), Postives = 75/105 (71.43%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G FATG+G+TD    + TG+   +VP T++F+ +GE+  Y+  KDLIL  IG+I V GA YK MEF G+ +E LS+E+RMT+ NM +EAG K
Sbjct:  120 IGADSHTCTYGALGAFATGVGSTDLAVAMATGEAWFRVPETMKFIYEGELQPYVTGKDLILHTIGDIGVNGALYKVMEFSGSVIEELSVEQRMTMSNMAIEAGAK 224          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_AQUAE (3-isopropylmalate dehydratase large subunit OS=Aquifex aeolicus GN=leuC PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.340e-28
Identity = 55/105 (52.38%), Postives = 78/105 (74.29%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G FATG+G+TD  + + TG+V L+VP +++F+  G++  +++ KDLIL  IG+I V GA Y++MEF G T+  LSME+R T+ NM +EAGGK
Sbjct:  119 VGADSHTCTYGALGAFATGVGSTDIAYAMATGEVWLRVPESMKFIFYGKLKPWVMGKDLILYTIGQIGVDGALYRAMEFDGETIRNLSMEQRFTIANMAIEAGGK 223          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_CLOD6 (3-isopropylmalate dehydratase large subunit OS=Clostridium difficile (strain 630) GN=leuC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.984e-28
Identity = 59/105 (56.19%), Postives = 74/105 (70.48%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G F+TG+G+TD G  + TGK   KVP  ++FVL  +   ++  KD+IL IIGEI V GA YKSMEF G  VE LSM++R T+CNM +EAG K
Sbjct:  120 IGADSHTCTYGALGAFSTGVGSTDMGAGMATGKCWFKVPGAIKFVLKNKPNKWISGKDIILHIIGEIGVDGALYKSMEFCGDGVEYLSMDDRFTICNMAIEAGAK 224          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_SYNAS (3-isopropylmalate dehydratase large subunit OS=Syntrophus aciditrophicus (strain SB) GN=leuC PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.648e-28
Identity = 58/105 (55.24%), Postives = 75/105 (71.43%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G FATG+G+TD    + TG+V  KVP ++RFVL G +  ++  KDLIL IIG+I V GA YK+MEF G T+  L+M +R T+ NM +EAGGK
Sbjct:  120 IGADSHTCTYGALGAFATGVGSTDLAAAMLTGEVWFKVPESIRFVLSGTLNPWVSGKDLILYIIGKIGVDGALYKAMEFTGDTIASLTMADRFTIANMAIEAGGK 224          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC1_PYRFU (3-isopropylmalate dehydratase large subunit 1 OS=Pyrococcus furiosus GN=leuC1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.648e-28
Identity = 55/105 (52.38%), Postives = 76/105 (72.38%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G FATG+G+TD    + TG+   +VP T++FV +G++  ++ +KDLIL  IG+I V GA YK MEF G  +E+LS+E+RMT+ NM +EAG K
Sbjct:  121 IGADSHTCTYGALGAFATGVGSTDLAVAMATGEAWFRVPETIKFVYEGDLQPWVTSKDLILYTIGDIGVNGALYKVMEFSGEVIEKLSVEQRMTMTNMAIEAGAK 225          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_HELMI (3-isopropylmalate dehydratase large subunit OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=leuC PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.683e-28
Identity = 55/105 (52.38%), Postives = 75/105 (71.43%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G FATG+G+TD    +  G+   KVP  ++F  +G++P+ +  KDLIL  IG+I V GA Y+SMEF G+ ++ LSM+ RMT+CNM +EAGGK
Sbjct:  120 IGADSHTCTYGALGAFATGVGSTDLAAGIALGEAWFKVPEAIKFEYEGKLPEDVTGKDLILHTIGDIGVDGALYQSMEFTGSAIDDLSMDGRMTMCNMAIEAGGK 224          
The following BLAST results are available for this feature:
BLAST of CF509788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_ARATH1.245e-5091.433-isopropylmalate dehydratase OS=Arabidopsis thali... [more]
LEUC_WOLSU6.013e-2954.293-isopropylmalate dehydratase large subunit OS=Wol... [more]
LEUC_HALOH7.854e-2955.243-isopropylmalate dehydratase large subunit OS=Hal... [more]
LEUC_METJA1.026e-2855.24Isopropylmalate/citramalate isomerase large subuni... [more]
LEUC1_PYRAB1.026e-2853.333-isopropylmalate dehydratase large subunit 1 OS=P... [more]
LEUC_AQUAE1.340e-2852.383-isopropylmalate dehydratase large subunit OS=Aqu... [more]
LEUC_CLOD62.984e-2856.193-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_SYNAS6.648e-2855.243-isopropylmalate dehydratase large subunit OS=Syn... [more]
LEUC1_PYRFU6.648e-2852.383-isopropylmalate dehydratase large subunit 1 OS=P... [more]
LEUC_HELMI8.683e-2852.383-isopropylmalate dehydratase large subunit OS=Hel... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-296 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509788 ID=CF509788; Name=CF509788; organism=Citrus sinensis; type=EST; length=318bp
GTTAGGTACAGACTCCCACACATGTACTGCTGGAGCATTTGGCCAATTTG
CCACTGGCATTGGCAACACTGATGCAGGTTTTGTATTGGGCACAGGGAAA
GTCTTGCTCAAGGTGCCCCCAACTCTGAGATTTGTATTGGATGGTGAAAT
GCCTGATTATTTGCTTGCGAAGGATTTGATTTTACAAATAATTGGTGAAA
TCTCTGTGGCTGGTGCAACATATAAATCTATGGAGTTTGTTGGCACAACT
GTTGAACGTTTAAGTATGGAAGAGCGCATGACATTATGCAACATGGTTGT
CGAAGCTGGGGGAAAGAA
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