CF509788
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_ARATH (3-isopropylmalate dehydratase OS=Arabidopsis thaliana GN=IIL1 PE=2 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 1.245e-50 Identity = 96/105 (91.43%), Postives = 101/105 (96.19%), Query Frame = 2 Query: 2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGK+LLKVPPT+RF+LDGEMP YL AKDLILQIIGEISVAGATYK+MEF GTT+E LSMEERMTLCNMVVEAGGK Sbjct: 196 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKILLKVPPTMRFILDGEMPSYLQAKDLILQIIGEISVAGATYKTMEFSGTTIESLSMEERMTLCNMVVEAGGK 300
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_WOLSU (3-isopropylmalate dehydratase large subunit OS=Wolinella succinogenes GN=leuC PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 6.013e-29 Identity = 57/105 (54.29%), Postives = 79/105 (75.24%), Query Frame = 2 Query: 2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 +G DSHTCT GA G FATG+G+TD + + TGK KVPP++R V G++ +++ KDLIL+II +I V GA YK++EF G T+E+LSM++R +LCNM +EAG K Sbjct: 119 IGADSHTCTHGALGAFATGMGSTDLAYAMITGKNWFKVPPSIRVVFKGKLQEHVYGKDLILEIIRQIGVDGALYKALEFQGDTIEQLSMDDRFSLCNMAIEAGAK 223
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_HALOH (3-isopropylmalate dehydratase large subunit OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=leuC PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 7.854e-29 Identity = 58/105 (55.24%), Postives = 75/105 (71.43%), Query Frame = 2 Query: 2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 +G DSHTCT GA G FATG+G+TD + TG KVP T++FV +GE+ ++ KDLIL IG+I V GA Y++MEF G T+E LSM+ RMT+ NM +EAGGK Sbjct: 120 IGADSHTCTYGALGAFATGVGSTDMAAAMATGYTWFKVPSTIQFVYNGELKPWVSGKDLILYTIGDIGVDGALYRAMEFTGETIENLSMDNRMTISNMAIEAGGK 224
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_METJA (Isopropylmalate/citramalate isomerase large subunit OS=Methanocaldococcus jannaschii GN=leuC PE=1 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.026e-28 Identity = 58/105 (55.24%), Postives = 77/105 (73.33%), Query Frame = 2 Query: 2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 +G DSHTCT GAFG FATGIG+TD V TGK+ KVP T+ F + G++ Y+ +KD+IL IIGE+ V GATYK+ +F G TV+++S+ RMT+ NM +E GGK Sbjct: 119 VGADSHTCTHGAFGAFATGIGSTDMAHVFATGKLWFKVPETIYFNITGDLQPYVTSKDVILSIIGEVGVDGATYKACQFGGETVKKMSIASRMTMTNMAIEMGGK 223
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC1_PYRAB (3-isopropylmalate dehydratase large subunit 1 OS=Pyrococcus abyssi GN=leuC1 PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.026e-28 Identity = 56/105 (53.33%), Postives = 75/105 (71.43%), Query Frame = 2 Query: 2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 +G DSHTCT GA G FATG+G+TD + TG+ +VP T++F+ +GE+ Y+ KDLIL IG+I V GA YK MEF G+ +E LS+E+RMT+ NM +EAG K Sbjct: 120 IGADSHTCTYGALGAFATGVGSTDLAVAMATGEAWFRVPETMKFIYEGELQPYVTGKDLILHTIGDIGVNGALYKVMEFSGSVIEELSVEQRMTMSNMAIEAGAK 224
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_AQUAE (3-isopropylmalate dehydratase large subunit OS=Aquifex aeolicus GN=leuC PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 1.340e-28 Identity = 55/105 (52.38%), Postives = 78/105 (74.29%), Query Frame = 2 Query: 2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 +G DSHTCT GA G FATG+G+TD + + TG+V L+VP +++F+ G++ +++ KDLIL IG+I V GA Y++MEF G T+ LSME+R T+ NM +EAGGK Sbjct: 119 VGADSHTCTYGALGAFATGVGSTDIAYAMATGEVWLRVPESMKFIFYGKLKPWVMGKDLILYTIGQIGVDGALYRAMEFDGETIRNLSMEQRFTIANMAIEAGGK 223
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_CLOD6 (3-isopropylmalate dehydratase large subunit OS=Clostridium difficile (strain 630) GN=leuC PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 2.984e-28 Identity = 59/105 (56.19%), Postives = 74/105 (70.48%), Query Frame = 2 Query: 2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 +G DSHTCT GA G F+TG+G+TD G + TGK KVP ++FVL + ++ KD+IL IIGEI V GA YKSMEF G VE LSM++R T+CNM +EAG K Sbjct: 120 IGADSHTCTYGALGAFSTGVGSTDMGAGMATGKCWFKVPGAIKFVLKNKPNKWISGKDIILHIIGEIGVDGALYKSMEFCGDGVEYLSMDDRFTICNMAIEAGAK 224
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_SYNAS (3-isopropylmalate dehydratase large subunit OS=Syntrophus aciditrophicus (strain SB) GN=leuC PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 6.648e-28 Identity = 58/105 (55.24%), Postives = 75/105 (71.43%), Query Frame = 2 Query: 2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 +G DSHTCT GA G FATG+G+TD + TG+V KVP ++RFVL G + ++ KDLIL IIG+I V GA YK+MEF G T+ L+M +R T+ NM +EAGGK Sbjct: 120 IGADSHTCTYGALGAFATGVGSTDLAAAMLTGEVWFKVPESIRFVLSGTLNPWVSGKDLILYIIGKIGVDGALYKAMEFTGDTIASLTMADRFTIANMAIEAGGK 224
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC1_PYRFU (3-isopropylmalate dehydratase large subunit 1 OS=Pyrococcus furiosus GN=leuC1 PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 6.648e-28 Identity = 55/105 (52.38%), Postives = 76/105 (72.38%), Query Frame = 2 Query: 2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 +G DSHTCT GA G FATG+G+TD + TG+ +VP T++FV +G++ ++ +KDLIL IG+I V GA YK MEF G +E+LS+E+RMT+ NM +EAG K Sbjct: 121 IGADSHTCTYGALGAFATGVGSTDLAVAMATGEAWFRVPETIKFVYEGDLQPWVTSKDLILYTIGDIGVNGALYKVMEFSGEVIEKLSVEQRMTMTNMAIEAGAK 225
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_HELMI (3-isopropylmalate dehydratase large subunit OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=leuC PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 8.683e-28 Identity = 55/105 (52.38%), Postives = 75/105 (71.43%), Query Frame = 2 Query: 2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 +G DSHTCT GA G FATG+G+TD + G+ KVP ++F +G++P+ + KDLIL IG+I V GA Y+SMEF G+ ++ LSM+ RMT+CNM +EAGGK Sbjct: 120 IGADSHTCTYGALGAFATGVGSTDLAAGIALGEAWFKVPEAIKFEYEGKLPEDVTGKDLILHTIGDIGVDGALYQSMEFTGSAIDDLSMDGRMTMCNMAIEAGGK 224 The following BLAST results are available for this feature:
BLAST of CF509788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF509788 ID=CF509788; Name=CF509788; organism=Citrus sinensis; type=EST; length=318bpback to top |