CF510012

Overview
NameCF510012
Unique NameCF510012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9490 contig Csv1_Contig9490:227..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510012 vs. ExPASy Swiss-Prot
Match: SNUT2_PONAB (U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo abelii GN=USP39 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.566e-50
Identity = 97/170 (57.06%), Postives = 119/170 (70.00%), Query Frame = 2
Query:   11 HHVYINLRTEKVYCLPDGYEINDPSLEDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSP-------LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTL 499
            HHV++NL T K YCLPD YEI D SLEDI +VL P FTK+Q+  LDK    SRA DG+ YLPG+VGLNNIK  D+ N  +Q+L  V PLRN+FL  +NY++ K P       LV RFG+L RK+W+ RNFK  VSPHE LQAV+  SKK F+I  Q + V+F+SW LN L
Sbjct:  161 HHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNAL 330          
BLAST of CF510012 vs. ExPASy Swiss-Prot
Match: SNUT2_MOUSE (U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus GN=Usp39 PE=2 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 1.566e-50
Identity = 97/170 (57.06%), Postives = 119/170 (70.00%), Query Frame = 2
Query:   11 HHVYINLRTEKVYCLPDGYEINDPSLEDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSP-------LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTL 499
            HHV++NL T K YCLPD YEI D SLEDI +VL P FTK+Q+  LDK    SRA DG+ YLPG+VGLNNIK  D+ N  +Q+L  V PLRN+FL  +NY++ K P       LV RFG+L RK+W+ RNFK  VSPHE LQAV+  SKK F+I  Q + V+F+SW LN L
Sbjct:  160 HHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNAL 329          
BLAST of CF510012 vs. ExPASy Swiss-Prot
Match: SNUT2_HUMAN (U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39 PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 1.566e-50
Identity = 97/170 (57.06%), Postives = 119/170 (70.00%), Query Frame = 2
Query:   11 HHVYINLRTEKVYCLPDGYEINDPSLEDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSP-------LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTL 499
            HHV++NL T K YCLPD YEI D SLEDI +VL P FTK+Q+  LDK    SRA DG+ YLPG+VGLNNIK  D+ N  +Q+L  V PLRN+FL  +NY++ K P       LV RFG+L RK+W+ RNFK  VSPHE LQAV+  SKK F+I  Q + V+F+SW LN L
Sbjct:  161 HHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNAL 330          
BLAST of CF510012 vs. ExPASy Swiss-Prot
Match: UBP10_SCHPO (Probable mRNA-splicing protein ubp10 OS=Schizosaccharomyces pombe GN=ubp10 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.858e-35
Identity = 74/163 (45.40%), Postives = 101/163 (61.96%), Query Frame = 2
Query:   11 HHVYINLRTEKVYCLPDGYEINDPSLEDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTL 499
            HHV++N  T K Y LP+ Y++   +L+DI +V+ P FTK +V +LD     S  L    Y+PG VG+NNIK  D+ NV I  L  V P RN+FL+ +N+ +C   LV R   L RK+W+ + FK  VSP E +Q V   S K++ I  Q +PVEF+SW LNTL
Sbjct:  114 HHVFVNCSTLKFYVLPESYQVESSALQDIAYVMRPTFTKLEVQRLDHTPQLSYDLMLKPYVPGFVGMNNIKNNDYFNVVIHMLAHVKPFRNYFLL-KNFDNCPQ-LVQRLAILIRKLWNHKAFKSHVSPQELIQEVTVLSHKKYSINEQKDPVEFLSWFLNTL 274          
The following BLAST results are available for this feature:
BLAST of CF510012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SNUT2_PONAB1.566e-5057.06U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo a... [more]
SNUT2_MOUSE1.566e-5057.06U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus mus... [more]
SNUT2_HUMAN1.566e-5057.06U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sa... [more]
UBP10_SCHPO1.858e-3545.40Probable mRNA-splicing protein ubp10 OS=Schizosacc... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-527 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510012 ID=CF510012; Name=CF510012; organism=Citrus sinensis; type=EST; length=500bp
GGAAGCAGGACACCATGTTTACATCAATCTTCGAACAGAGAAAGTTTATT
GCCTTCCTGATGGTTATGAAATTAATGACCCTTCACTGGAAGATATTCGG
CATGTTCTAAATCCAAGGTTTACCAAGGAGCAAGTAGATCAGCTTGACAA
AAATAAGCTATGGTCTAGGGCTTTGGATGGTTCGGACTATCTTCCTGGAA
TGGTGGGTCTGAATAACATCAAGGAGACTGATTTTGTGAATGTCACAATT
CAATCTCTAATGAGAGTTACTCCATTAAGGAACTTCTTCCTTATCCCTGA
AAATTACCGGCACTGCAAATCTCCACTCGTTCATCGTTTTGGAGACCTTA
CTAGGAAGATTTGGCATGCTCGAAATTTTAAAGGACAGGTCAGTCCACAT
GAGTTTCTACAAGCAGTTATGAAAGCCAGTAAGAAACGGTTTCGAATAGG
TGTACAGTCCAACCCCGTTGAATTCATGTCATGGCTTCTTAACACACTGC
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