AX-160385265 | Citrus Genome Database

Marker Overview

Name

AX-160385265

dbSNP ID

N/A

SNP Array ID

Axiom Citrus HD Genotyping Array (Citrus15 AX1):	Affx-159986837
Axiom Citrus Genotyping Array:	Affx-159986837

Type

SNP

SNP Alleles

C/T

5' Flanking Sequence

GGCACATACAGGAAAGAGGCTGATTTCTCCACAGA

3' Flanking Sequence

GACATGATTCTCGGCAAGAAACTCGTTCTTCAGGC

Species

Publication

Contact

Associated With

Contact

Name

Details

Mikeal L. Roose

First name:	Mikeal
Last name:	Roose
Institution:	University of California, Riverside
Address:	Department of Botany and Plant Sciences, University of California, Riverside, CA 92521, USA
Country:	USA
Email:	roose@ucr.edu

Libraries


Library Name	Type
Axiom Citrus Genotyping Array	SNP_chip
Axiom Citrus HD Genotyping Array (Citrus15 AX1)	SNP_chip

Publications


Year	Publication
2022	Mattia MR, Du D, Yu Q, Kahn T, Roose M, Hiraoka Y, Wang Y, Munoz P, Gmitter FG. Genome-Wide Association Study of Healthful Flavonoids among Diverse Mandarin Accessions.. Plants (Basel, Switzerland). 2022 Jan 25; 11(3).
2024	Hiraoka Y, Ferrante SP, Wu GA, Federici CT, Roose ML. Development and Assessment of SNP Genotyping Arrays for Citrus and Its Close Relatives.. Plants (Basel, Switzerland). 2024 Feb 29; 13(5).

Sequence

>AX-160385265 ID=AX-160385265; Name=AX-160385265; organism=Citrus spp.; type=genetic_marker; length=71bp
GGCACATACAGGAAAGAGGCTGATTTCTCCACAGAYGACATGATTCTCGG
CAAGAAACTCGTTCTTCAGGC

Alignments

Feature Name	Type	Location	Analysis
scaffold_5	supercontig	scaffold_5:34255060..34255060.	Citrus clementina genome v1.0 (JGI)
scaffold_5	supercontig	scaffold_5:34255060..34255060.	Citrus clementina genome v1.0 (JGI)

Annotated Terms

The following terms have been associated with this genetic_marker:

Vocabulary: **Citrus Trait Ontology**
Term	Definition
66:Isosinensetin concentration	Isosinensetin concentration