CF510223
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: WDR12_CHLRE (Ribosome biogenesis protein WDR12 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_128420 PE=3 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 1.705e-17 Identity = 47/87 (54.02%), Postives = 63/87 (72.41%), Query Frame = 2 Query: 188 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448 +V V+F TKL +VP +A+PS+L R+GLS ++N+LL A++P PFDFLI+GELVR SLEQ LLA +SAE LE+EY+ A Sbjct: 6 QVLVKFVTKLPAHLRVPETPVAVPSDLKRYGLSQIINHLL-ALDPP---RPFDFLIDGELVRKSLEQHLLAHNLSAESTLEVEYVPA 88
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_SCHPO (Ribosome biogenesis protein ytm1 OS=Schizosaccharomyces pombe GN=ytm1 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 5.677e-13 Identity = 37/95 (38.95%), Postives = 61/95 (64.21%), Query Frame = 2 Query: 164 DQNEENSRRVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448 D S +VQVRF T+ V I +P++L R+GLS +VN+LL+ P PFDFL+ G+L++ +L+++++ G+S E +L+IEYI++ Sbjct: 2 DAQSAPSGQVQVRFTTR-NEDLAVGDTPIFVPTSLKRYGLSQIVNHLLKTEKPT----PFDFLVQGQLLKTTLDEYIVQNGLSTESILDIEYIQS 91
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_PICGU (Ribosome biogenesis protein YTM1 OS=Pichia guilliermondii GN=YTM1 PE=3 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 9.684e-13 Identity = 37/87 (42.53%), Postives = 59/87 (67.82%), Query Frame = 2 Query: 188 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448 +V+VRF T + KV N I +P +L R+GLS +VN+LL + K+ PFDFL++G L+R SL+ +L +G+S E V++++Y +A Sbjct: 18 QVKVRFFTNEEDDLKVSENPIFVPVSLKRYGLSEIVNHLLNDGETK-KAIPFDFLVDGVLLRTSLQDYLTKQGLSTETVIDLQYTRA 103
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_AJECN (Ribosome biogenesis protein YTM1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=YTM1 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.818e-12 Identity = 41/109 (37.61%), Postives = 68/109 (62.39%), Query Frame = 2 Query: 137 MDMNIETPEDQNEENSRRVQVRFKTKLKPPQK---VPSNS--IAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448 MD + P D + S++ Q + + KL + +P ++ I +P+ L R+ LS++VNNLL++ P PF+FLING +R S++++L A GISAE L++EY++A Sbjct: 1 MDGLEDGPLDASTATSQKPQRQVRLKLTSRHEDIALPESTGPILVPTGLRRYALSTLVNNLLESEKPI----PFEFLINGTYLRTSIDEYLTANGISAETTLDVEYVRA 105
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_EMENI (Ribosome biogenesis protein ytm1 OS=Emericella nidulans GN=ytm1 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 4.806e-12 Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = 2 Query: 137 MDMNIETPEDQNEENSRRVQVRFKTKLKPPQKVPSNS--IAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448 MD + + Q + RVQ+ T + +P N+ I +P+ L R+ LS++VNNLL P PF+FLING +R S++++L A GISAE LEIEY++A Sbjct: 1 MDTSQVSVSSQAAQRQVRVQL---TSKQEDIALPDNTGPILVPTGLKRYALSTLVNNLLGNDKPI----PFEFLINGSFLRTSIDEYLTANGISAETTLEIEYVRA 99
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_ASPNC (Ribosome biogenesis protein ytm1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=ytm1 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 4.806e-12 Identity = 43/107 (40.19%), Postives = 62/107 (57.94%), Query Frame = 2 Query: 131 GQMDMNIETPEDQNEENSRRVQVRFKTK-LKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448 G D Q+ + RVQ+ K + + P+ + I +P+ L R+ LS++VNNLL P PF+FLING +R S++++L A GISAE LEIEYI+A Sbjct: 3 GVQDSTSAAASSQSAQRQVRVQLVSKQEDIALPES--TGPILVPTGLRRYALSTLVNNLLGNDKPV----PFEFLINGAFLRTSIDEYLTANGISAETTLEIEYIRA 103
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_NEOFI (Ribosome biogenesis protein ytm1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ytm1 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 6.277e-12 Identity = 40/90 (44.44%), Postives = 61/90 (67.78%), Query Frame = 2 Query: 185 RRVQVRFKTKLKPPQKVPSNS--IAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448 R+V+V+ +K + +P N+ I +P++L R+ LS++VNNLL P PF+FLING +R S++++L A GISAE LEIEY++A Sbjct: 18 RQVRVQLTSK-QEDIALPDNAGPILVPTSLRRYALSTLVNNLLGNDKPI----PFEFLINGTFLRTSIDEYLTANGISAETTLEIEYVRA 102
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_ASPOR (Ribosome biogenesis protein ytm1 OS=Aspergillus oryzae GN=ytm1 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 6.277e-12 Identity = 40/90 (44.44%), Postives = 60/90 (66.67%), Query Frame = 2 Query: 185 RRVQVRFKTKLKPPQKVPSNS--IAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448 R+V+V+ +K + +P N+ I +P+ L R+ LS++VNNLL P PF+FLING +R S++++L A GISAE LEIEY++A Sbjct: 16 RQVRVQLTSK-QEDIALPENTGPILVPTGLRRYALSTLVNNLLGNDKPI----PFEFLINGSFLRTSIDEYLTANGISAETTLEIEYVRA 100
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_ASHGO (Ribosome biogenesis protein YTM1 OS=Ashbya gossypii GN=YTM1 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 6.277e-12 Identity = 37/92 (40.22%), Postives = 60/92 (65.22%), Query Frame = 2 Query: 176 ENSRRVQVRFKTKLKPPQ-KVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448 E+ +V+V+F T+ + + V + +P +L R+GLS ++N+LL P PFDFLI+G+L+R SL+ +L KG+S+E VL +EY +A Sbjct: 3 EDKSQVKVKFFTRSRTSRLHVLDAPLLLPVSLKRYGLSEIINHLLGLAEPV----PFDFLIDGQLLRCSLQDYLTRKGLSSEAVLNVEYTRA 90
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_COCIM (Ribosome biogenesis protein YTM1 OS=Coccidioides immitis GN=YTM1 PE=3 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 1.071e-11 Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = 2 Query: 161 EDQNEENSRRVQVRFKTK---LKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448 E Q++ + ++RF T+ L P+ + I +P+ L R+ LS++VNNLL P P +FLING +R S+++FL A GISAE L++EY++A Sbjct: 8 EVQSQTAQTQARLRFSTRDEDLALPES--TGPILVPTGLRRYALSTLVNNLLATEKPV----PLEFLINGTYLRTSVDEFLTANGISAETTLDVEYVRA 100 The following BLAST results are available for this feature:
BLAST of CF510223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >CF510223 ID=CF510223; Name=CF510223; organism=Citrus sinensis; type=EST; length=450bpback to top |