CF832336
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.889e-37 Identity = 74/101 (73.27%), Postives = 81/101 (80.20%), Query Frame = -1 Query: 528 EGFYEKMKAVGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 827 EGFYEKM VG SE SMD++E S+ EIFCGHSE A+AFGLINT PGMPIWVTKNL C +CH+TVKFISK VRR+I VRD EHFHHFKDG CSCGD Sbjct: 766 EGFYEKMSEVGLTKISESSSMDETEISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISVRDAEHFHHFKDGECSCGD 866
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.188e-23 Identity = 56/108 (51.85%), Postives = 67/108 (62.04%), Query Frame = -1 Query: 516 QFWEGFYEKMKAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 836 +F + E+M+ G+ A + V D E K E+ GHSE LAVAFG+INT PG I VTKN+ C CH +KFISKI R+I VRD FHHF G CSCGD YW Sbjct: 610 EFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGD--YW 715
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP285_ARATH (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 5.898e-23 Identity = 53/107 (49.53%), Postives = 67/107 (62.62%), Query Frame = -1 Query: 516 FWEGFYEKMKAVGFAGSEYVSMDKSEASKAEIF-CGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 833 + E +E+M+ G+ + E + EI CGHSE LA+AFG++NT+PG I V KNL C CH KFISKIV R+I +RD FH FK+GTCSCGD YW Sbjct: 786 YLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGD--YW 890
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.898e-23 Identity = 51/105 (48.57%), Postives = 67/105 (63.81%), Query Frame = -1 Query: 516 EGFYEKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 827 E ++K GF ++ S+ D ++ E C HSE +A+A+GLI+T G P+ +TKNL C +CH K ISK+V R+I VRDT FHHFKDG CSCGD YW Sbjct: 592 EWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGD--YW 694
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP210_ARATH (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 8.517e-22 Identity = 47/79 (59.49%), Postives = 53/79 (67.09%), Query Frame = -1 Query: 528 KSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 764 + E K + CGHSE LA+AFGL+NT PG P+ V KNL C CH K ISKIV R+I VRD FH FKDGTCSC D Sbjct: 802 EEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKD 880
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PPR74_ARATH (Pentatricopeptide repeat-containing protein At1g47580, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H50 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.897e-21 Identity = 54/109 (49.54%), Postives = 68/109 (62.39%), Query Frame = -1 Query: 516 YEKMKAVGF----AG----SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 818 Y K+K++G AG ++YV D E +K + HSE LA+AFG+INT PG I V KNL C CHN +K +S I R+I VRD + FHHF+DG CSCGD YW Sbjct: 133 YVKLKSLGKEVRDAGYVPETKYVLHDIDEEAKEKALMHHSERLAIAFGIINTPPGTTIRVMKNLRICGDCHNFIKILSSIEDREIIVRDNKRFHHFRDGNCSCGD--YW 239
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 3.236e-21 Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = -1 Query: 516 EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 782 ++ D E + ++ GHSE LAV FGL+NT G P+ V KNL C CH +KFIS R+IF+RDT FHHFKDG CSCGD +W Sbjct: 674 DFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGD--FW 760
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 5.520e-21 Identity = 51/108 (47.22%), Postives = 63/108 (58.33%), Query Frame = -1 Query: 516 QFWEGFYEKMKAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 836 +F K+ G+ + + V D E K HSE LA+AFG++NT PG + V KNL C CHN +K ISKIV R+ VRD + FHHFKDG CSCGD YW Sbjct: 554 EFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGD--YW 659
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP419_ARATH (Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.210e-21 Identity = 50/101 (49.50%), Postives = 64/101 (63.37%), Query Frame = -1 Query: 516 EKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815 EK+K +G+A ++ D + K E+ HSE LA+AFGLINT G + V KNL C CH +K IS +V R+I +RD FHHFK+GTCSCGD YW Sbjct: 599 EKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGD--YW 697
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP316_ARATH (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 9.416e-21 Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = -1 Query: 516 EKMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815 +KMK G+ E+ + E K ++ HSE LAVAFG I G I V KNL C CH +KFIS+I +R+I VRDT FHHFKDG+CSCGD YW Sbjct: 563 KKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGD--YW 661 The following BLAST results are available for this feature:
BLAST of CF832336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832336 ID=CF832336; Name=CF832336; organism=Citrus sinensis; type=EST; length=848bpback to top |