CF832363
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832363 vs. ExPASy Swiss-Prot
Match: RL281_ARATH (60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 7.024e-54 Identity = 102/137 (74.45%), Postives = 119/137 (86.86%), Query Frame = 2 Query: 158 MATGPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVK 568 MAT PGQLIWEIVK NNCFLVKQFGRGN+ V+FSKE NNL N++S+KHSGLAN+KTVTIQ KD +VVLAT KTKKQNKP ++KS ++KEFPRM+KAV NQV DNYYRPDLKKAALARLSA+++ L+V+KSG K Sbjct: 1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGAK 137
BLAST of CF832363 vs. ExPASy Swiss-Prot
Match: RL282_ARATH (60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 1.565e-53 Identity = 101/137 (73.72%), Postives = 117/137 (85.40%), Query Frame = 2 Query: 158 MATGPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVK 568 MAT PGQLIWEIVK+NNCFLVKQFGRGNA V+FSKE NNL N+NS+KHSGLAN+KTVTIQ GKD VVL T KTK+QNKP ++KS ++KEF RM+K V NQV DNYYRPDLKKAALARLSA+++ L+V+KSG K Sbjct: 1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGPK 137
BLAST of CF832363 vs. ExPASy Swiss-Prot
Match: RL28_SPOFR (60S ribosomal protein L28 OS=Spodoptera frugiperda GN=RpL28 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.768e-15 Identity = 54/133 (40.60%), Postives = 76/133 (57.14%), Query Frame = 2 Query: 179 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTI--QPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQV----ADNYYRPDLKKAALARLSAVNRSLKVSKS 559 L W I++ NN FLVK + N FSKEPNN+ NLNS++++GL +K V + P K +VV K K NKPA K+ +R++F A+ + +V N+YR DL KA L R SA+ RS + K+ Sbjct: 5 LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKGFTVVY--KKAKATNKPA----KNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILRSQRPIKA 128
BLAST of CF832363 vs. ExPASy Swiss-Prot
Match: RL28_MOUSE (60S ribosomal protein L28 OS=Mus musculus GN=Rpl28 PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 6.427e-15 Identity = 44/123 (35.77%), Postives = 70/123 (56.91%), Query Frame = 2 Query: 179 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLK 547 L W +V+ + FL+K+ + +S EPNNL NSF+++GL +RKTV ++P VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+ RS K Sbjct: 5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK 122
BLAST of CF832363 vs. ExPASy Swiss-Prot
Match: RL28_HUMAN (60S ribosomal protein L28 OS=Homo sapiens GN=RPL28 PE=1 SV=3) HSP 1 Score: 80.4925 bits (197), Expect = 6.427e-15 Identity = 44/123 (35.77%), Postives = 70/123 (56.91%), Query Frame = 2 Query: 179 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLK 547 L W +V+ + FL+K+ + +S EPNNL NSF+++GL +RKTV ++P VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+ RS K Sbjct: 5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK 122
BLAST of CF832363 vs. ExPASy Swiss-Prot
Match: RL28_BOVIN (60S ribosomal protein L28 OS=Bos taurus GN=RPL28 PE=2 SV=3) HSP 1 Score: 80.4925 bits (197), Expect = 6.427e-15 Identity = 44/123 (35.77%), Postives = 70/123 (56.91%), Query Frame = 2 Query: 179 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLK 547 L W +V+ + FL+K+ + +S EPNNL NSF+++GL +RKTV ++P VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+ RS K Sbjct: 5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK 122
BLAST of CF832363 vs. ExPASy Swiss-Prot
Match: RL28_RAT (60S ribosomal protein L28 OS=Rattus norvegicus GN=Rpl28 PE=1 SV=4) HSP 1 Score: 75.8702 bits (185), Expect = 1.583e-13 Identity = 43/123 (34.96%), Postives = 69/123 (56.10%), Query Frame = 2 Query: 179 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLK 547 L W +V+ + FL+K+ + +S EPNNL NSF+++GL +RKTV ++ VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+ RS K Sbjct: 5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK 122
BLAST of CF832363 vs. ExPASy Swiss-Prot
Match: RL28_DROME (60S ribosomal protein L28 OS=Drosophila melanogaster GN=RpL28 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13 Identity = 49/134 (36.57%), Postives = 73/134 (54.48%), Query Frame = 2 Query: 158 MATGPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFP----RMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLK 547 MAT L W I++ NN FL+K + + FS EPNNL +++S+++SG+ ++KT+ + P K K +PA K+T+R +F R K + N + + YR DL +AAL R SAV RS K Sbjct: 1 MATS-SHLNWLIIRNNNAFLLK---KRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKGFTAVLKKGKYAQRPA----KNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLRSQK 126
BLAST of CF832363 vs. ExPASy Swiss-Prot
Match: RL28E_SCHPO (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe GN=rpl28e PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.286e-12 Identity = 43/130 (33.08%), Postives = 68/130 (52.31%), Query Frame = 2 Query: 179 LIWEIVKKNNCFLVK--QFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMA-KAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKS 559 LIW++++ NN FLVK +FG ++F++EP N+ N+ + SGL N K V +Q V++ K KPA L K + R K++ ++ YR DL K ++AR SA+ S + K+ Sbjct: 7 LIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRPKKT 132
BLAST of CF832363 vs. ExPASy Swiss-Prot
Match: RL28_DICDI (60S ribosomal protein L28 OS=Dictyostelium discoideum GN=rpl28 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11 Identity = 48/127 (37.80%), Postives = 64/127 (50.39%), Query Frame = 2 Query: 179 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQP-GGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSK 556 L+W I+KKNN FL G + S EP NL N NS K+SGLA R T+ + GK VV+++ KK PA +T R V +A Y P+L+ AAL RL V +L+ +K Sbjct: 5 LVWSIIKKNNAFLKSSHG-----LTLSAEPGNLRNKNSLKYSGLARRTTIDVAAVNGK---VVVSSKIVKKAAFPAQSKKTTTFSTVNTRKTARFVKTLA-TQYAPELRAAALGRLHRVQSALRSAK 122 The following BLAST results are available for this feature:
BLAST of CF832363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF832363 ID=CF832363; Name=CF832363; organism=Citrus sinensis; type=EST; length=568bpback to top |