CF833092
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF833092 vs. ExPASy Swiss-Prot
Match: NLAL1_ARATH (Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana GN=At3g03920 PE=2 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.418e-46 Identity = 87/103 (84.47%), Postives = 97/103 (94.17%), Query Frame = -2 Query: 290 EGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPKGQAQAG 598 EGPP+EVVE+++F+HACEGDAVTKL+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FS+KMMEGIVATSYSPGDKF+IDP KLLPLARFLPQPKGQ+ G Sbjct: 52 EGPPSEVVEVATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGIVATSYSPGDKFFIDPYKLLPLARFLPQPKGQSTGG 154
BLAST of CF833092 vs. ExPASy Swiss-Prot
Match: NLAL2_ARATH (H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana GN=At5g18180 PE=2 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 5.578e-43 Identity = 82/100 (82.00%), Postives = 92/100 (92.00%), Query Frame = -2 Query: 299 EGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPKGQA 598 EGPP+EVVE+++FLHACEGDAV KL+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FS+KM EGIVATSYS GDKF+I P KLLPL+RFLPQPKGQ+ Sbjct: 39 EGPPSEVVEVATFLHACEGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATSYSQGDKFFISPEKLLPLSRFLPQPKGQS 138
BLAST of CF833092 vs. ExPASy Swiss-Prot
Match: GAR1_COCIM (H/ACA ribonucleoprotein complex subunit 1 OS=Coccidioides immitis GN=GAR1 PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.349e-33 Identity = 63/96 (65.62%), Postives = 78/96 (81.25%), Query Frame = -2 Query: 308 GPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 595 GPP V+E+ SF+HACEG+ V + N KIP+FNAPIYL+NKT +GKVDE+ GPIN+ YF++K EGIVATS+ PGDKFYI KLLPL +FLP+PK Sbjct: 35 GPPTTVLEMGSFMHACEGEMVCESINPKIPYFNAPIYLENKTPVGKVDEVLGPINQVYFTIKPQEGIVATSFKPGDKFYIGGDKLLPLEKFLPKPK 130
BLAST of CF833092 vs. ExPASy Swiss-Prot
Match: GAR1_NEOFI (H/ACA ribonucleoprotein complex subunit 1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=gar1 PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 3.068e-33 Identity = 63/96 (65.62%), Postives = 79/96 (82.29%), Query Frame = -2 Query: 308 GPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 595 GPPA+V+E+ +F+HACEG+ V + N KIP+FNAPIYL+NKT IGKVDE+ GPIN+ YF++K EGIVATS+ PGDK YI KLLPL +FLP+PK Sbjct: 35 GPPAQVLEMGTFMHACEGEMVCESVNPKIPYFNAPIYLENKTPIGKVDEVLGPINQVYFTIKPQEGIVATSFKPGDKVYIGGDKLLPLEKFLPKPK 130
BLAST of CF833092 vs. ExPASy Swiss-Prot
Match: GAR1_KLULA (H/ACA ribonucleoprotein complex subunit 1 OS=Kluyveromyces lactis GN=GAR1 PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.166e-32 Identity = 62/97 (63.92%), Postives = 78/97 (80.41%), Query Frame = -2 Query: 308 EGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 598 +GPP V+E+ +FLH CEGD V + N KIP+FNAPIYL+NKTQ+GKVDEI GP+NE +F+VK +G+ A S+S GDKFYI P KLLP+ RFLP+PK Sbjct: 29 QGPPDSVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFTVKCSDGVKAESFSEGDKFYIAPDKLLPIERFLPKPK 125
BLAST of CF833092 vs. ExPASy Swiss-Prot
Match: GAR1_CANGA (H/ACA ribonucleoprotein complex subunit 1 OS=Candida glabrata GN=GAR1 PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.166e-32 Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = -2 Query: 308 EGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 598 +GPP V+E+ F+H CEGD V + N K+P+FNAPIYL+NKTQ+GKVDEI GP+NE YF++K EG+ ATS+ GDKFYI P KLLP+ RF+P+PK Sbjct: 32 QGPPDTVLEMGEFMHPCEGDVVCRSINTKVPYFNAPIYLENKTQVGKVDEILGPLNEVYFTIKCGEGVQATSFKEGDKFYIAPDKLLPIERFIPKPK 128
BLAST of CF833092 vs. ExPASy Swiss-Prot
Match: GAR1_CHAGB (H/ACA ribonucleoprotein complex subunit 1 OS=Chaetomium globosum GN=GAR1 PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 9.868e-32 Identity = 62/96 (64.58%), Postives = 76/96 (79.17%), Query Frame = -2 Query: 308 GPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 595 GPPA V+E+ F+HACEG+ V + TN K+P FNAPIYL+NKT +GKVDE+ GPIN+ YF++K EGI ATS+ GDKFYI KLLPL RFLP+PK Sbjct: 32 GPPATVLEMGKFIHACEGEMVIESTNPKVPHFNAPIYLENKTAVGKVDEVLGPINQVYFTIKPSEGIQATSFKYGDKFYIAGEKLLPLERFLPKPK 127
BLAST of CF833092 vs. ExPASy Swiss-Prot
Match: GAR1_DEBHA (H/ACA ribonucleoprotein complex subunit 1 OS=Debaryomyces hansenii GN=GAR1 PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.289e-31 Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = -2 Query: 308 EGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 598 +GPP V+E+ +F+ +CEGD V + N KIP+FNAPIYL+NKTQ+GKVDEI GP+NE +F++K EG+ A S+ GDKFYI P KLLPL RFLP+PK Sbjct: 23 QGPPDTVLEMGAFMQSCEGDIVCRSINVKIPYFNAPIYLENKTQVGKVDEILGPVNEVFFTIKPSEGVQADSFKDGDKFYIGPDKLLPLERFLPKPK 119
BLAST of CF833092 vs. ExPASy Swiss-Prot
Match: GAR1_YEAST (H/ACA ribonucleoprotein complex subunit 1 OS=Saccharomyces cerevisiae GN=GAR1 PE=1 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.683e-31 Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = -2 Query: 308 EGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 598 +GPP V+E+ +FLH CEGD V + N KIP+FNAPIYL+NKTQ+GKVDEI GP+NE +F++K +G+ ATS+ GDKFYI KLLP+ RFLP+PK Sbjct: 31 QGPPDTVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFTIKCGDGVQATSFKEGDKFYIAADKLLPIERFLPKPK 127
BLAST of CF833092 vs. ExPASy Swiss-Prot
Match: GAR1_PICST (H/ACA ribonucleoprotein complex subunit 1 OS=Pichia stipitis GN=GAR1 PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.683e-31 Identity = 61/97 (62.89%), Postives = 77/97 (79.38%), Query Frame = -2 Query: 308 EGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 598 +GPP V+E+ +F+ ACEGD V + N KIP+FNAPIYL+NKTQIGKVDEI GP+NE +F++K EG+ A S+ GDKF+I P KLLPL RFLP+PK Sbjct: 23 QGPPDTVLEMGAFMQACEGDIVCRSINVKIPYFNAPIYLENKTQIGKVDEILGPLNEVFFTIKPSEGVKADSFKEGDKFFIGPDKLLPLERFLPKPK 119 The following BLAST results are available for this feature:
BLAST of CF833092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
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Sequences
The
following sequences are available for this feature:
EST sequence >CF833092 ID=CF833092; Name=CF833092; organism=Citrus sinensis; type=EST; length=755bpback to top |