CF833101

Overview
NameCF833101
Unique NameCF833101
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig259 contig Csv1_Contig259:361..1056. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833101 vs. ExPASy Swiss-Prot
Match: EIF3F_ARATH (Eukaryotic translation initiation factor 3 subunit F OS=Arabidopsis thaliana GN=TIF3F1 PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 2.826e-75
Identity = 137/193 (70.98%), Postives = 157/193 (81.35%), Query Frame = 1
Query:    4 VNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRTQLSLAEKLNTAAQM 582
            VN +E IVGW+STG GV GGS+LIH+FY REVPNP+HLTVDTGF NGEGT+KA+VS NLSLGDRQL A FQEIP+DLRM++AERVGFD+LK+TSVDKLP+DLEGME+ MERLLTLIND+YKYVD  V G   PDN++GR +++ VASLPKL P  FD LVN              ITRTQLSLAEKLNTAAQM
Sbjct:  100 VNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAFVSSNLSLGDRQLVAHFQEIPVDLRMVDAERVGFDVLKATSVDKLPNDLEGMELTMERLLTLINDVYKYVDSVVGGQIAPDNNIGRFIADAVASLPKLPPQVFDNLVNDSLQDQLLLLYLSSITRTQLSLAEKLNTAAQM 292          
BLAST of CF833101 vs. ExPASy Swiss-Prot
Match: EIF3F_PANTR (Eukaryotic translation initiation factor 3 subunit F OS=Pan troglodytes GN=EIF3F PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.120e-30
Identity = 67/192 (34.90%), Postives = 107/192 (55.73%), Query Frame = 1
Query:    4 VNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST-----SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRTQLSLAEKL 564
            V+P E+I+GW++TG  +T  S LIHE+Y RE PNP+HLTVDT  +NG  ++KAYVS  + +  R +   F  + +     + ER+G D++  T      V  L SDL+ +     R+   ++ + +Y +D + G    DN+VGR L   V  +PK+ P  F+ ++N              +T++Q++L EKL
Sbjct:  167 VSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKL 358          
BLAST of CF833101 vs. ExPASy Swiss-Prot
Match: EIF3F_MACFA (Eukaryotic translation initiation factor 3 subunit F OS=Macaca fascicularis GN=EIF3F PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.120e-30
Identity = 67/192 (34.90%), Postives = 107/192 (55.73%), Query Frame = 1
Query:    4 VNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST-----SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRTQLSLAEKL 564
            V+P E+I+GW++TG  +T  S LIHE+Y RE PNP+HLTVDT  +NG  ++KAYVS  + +  R +   F  + +     + ER+G D++  T      V  L SDL+ +     R+   ++ + +Y +D + G    DN+VGR L   V  +PK+ P  F+ ++N              +T++Q++L EKL
Sbjct:  167 VSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKL 358          
BLAST of CF833101 vs. ExPASy Swiss-Prot
Match: EIF3F_HUMAN (Eukaryotic translation initiation factor 3 subunit F OS=Homo sapiens GN=EIF3F PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.120e-30
Identity = 67/192 (34.90%), Postives = 107/192 (55.73%), Query Frame = 1
Query:    4 VNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST-----SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRTQLSLAEKL 564
            V+P E+I+GW++TG  +T  S LIHE+Y RE PNP+HLTVDT  +NG  ++KAYVS  + +  R +   F  + +     + ER+G D++  T      V  L SDL+ +     R+   ++ + +Y +D + G    DN+VGR L   V  +PK+ P  F+ ++N              +T++Q++L EKL
Sbjct:  163 VSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKL 354          
BLAST of CF833101 vs. ExPASy Swiss-Prot
Match: EIF3F_MOUSE (Eukaryotic translation initiation factor 3 subunit F OS=Mus musculus GN=Eif3f PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.769e-30
Identity = 67/192 (34.90%), Postives = 108/192 (56.25%), Query Frame = 1
Query:    4 VNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST-----SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRTQLSLAEKL 564
            V+P E+I+GW++TG  +T  S LIHE+Y RE PNP+HLTVDTG ++G  ++KAYVS  + +  R +   F  + +     + ER+G D++  T      V  L SDL+ +     R+   ++ + +Y +D + G    DN+VGR L   V  +PK+ P  F+ ++N              +T++Q++L EKL
Sbjct:  167 VSPNELILGWYATGHDITEHSVLIHEYYSRESPNPIHLTVDTGLQHGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKL 358          
BLAST of CF833101 vs. ExPASy Swiss-Prot
Match: EI3F1_DROAN (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila ananassae GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.680e-27
Identity = 71/197 (36.04%), Postives = 104/197 (52.79%), Query Frame = 1
Query:    4 VNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPS----------DLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRTQLSLAEKL 564
            VNP E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   ++AYV + L +   +    F  IP++L   E E  G  +L+ T V   P+          DL  +    ++L  L++ I KYVDD +     PDN+VGR L + + S+P ++   F ++ N              + +TQL L EKL
Sbjct:   79 VNPNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGGKSGCMFTPIPVELTSYEPETFGLKLLQKT-VGVSPAHRPKTVPPMLDLAQISEASQKLQQLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTHEQFTQMFNANVRNLLLVITLSQLIKTQLQLNEKL 274          
BLAST of CF833101 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPS (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.384e-27
Identity = 70/197 (35.53%), Postives = 103/197 (52.28%), Query Frame = 1
Query:    4 VNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPS----------DLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRTQLSLAEKL 564
            VN  E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   +++YV + L +   +    F  IP++L   E E  G  +L+ T V   P+          DL  +     +L +L++ I KYVDD +     PDN+VGR L + + S+P +S   F ++ N              + +TQL L EKL
Sbjct:   79 VNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRSYVCIQLGVPGGKTGCMFTPIPVELTSYEPETFGLKLLQKT-VGVAPANRPKTVPPMLDLAQISEASTKLQSLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMSHEQFTQMFNANVRNLLMVITLSQLIKTQLQLNEKL 274          
BLAST of CF833101 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPE (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila persimilis GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.384e-27
Identity = 70/197 (35.53%), Postives = 103/197 (52.28%), Query Frame = 1
Query:    4 VNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPS----------DLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRTQLSLAEKL 564
            VN  E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   +++YV + L +   +    F  IP++L   E E  G  +L+ T V   P+          DL  +     +L +L++ I KYVDD +     PDN+VGR L + + S+P +S   F ++ N              + +TQL L EKL
Sbjct:   79 VNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRSYVCIQLGVPGGKTGCMFTPIPVELTSYEPETFGLKLLQKT-VGVAPANRPKTVPPMLDLAQISEASTKLQSLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMSHEQFTQMFNANVRNLLMVITLSQLIKTQLQLNEKL 274          
BLAST of CF833101 vs. ExPASy Swiss-Prot
Match: EI3F1_DROGR (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila grimshawi GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.384e-27
Identity = 70/196 (35.71%), Postives = 104/196 (53.06%), Query Frame = 1
Query:    4 VNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST---SVDKLPS------DLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRTQLSLAEKL 564
            VN  E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   ++AYV + L +   +    F  IP++L   E E  G  +L+ T   S  + P       DL  +    ++L +L++ I KYVDD +     PDN+VGR L + + S+P ++   F ++ N              + +TQL L EKL
Sbjct:   79 VNSNESVVGWWATGNEVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGGKTGCMFTPIPVELTSYEPETFGLKLLQKTVGVSPAQRPKTVPPMLDLAQISEASQKLQSLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTHEQFTQMFNANVRDLLMVITLSQLIKTQLQLNEKL 274          
BLAST of CF833101 vs. ExPASy Swiss-Prot
Match: EI3F1_DROYA (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila yakuba GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.857e-26
Identity = 70/197 (35.53%), Postives = 103/197 (52.28%), Query Frame = 1
Query:    4 VNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPS----------DLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXXITRTQLSLAEKL 564
            VN  E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   ++AYV + L +   +    F  IP++L   E E  G  +L+ T V   P+          DL  +     +L +L++ I KYVDD +     PDN+VGR L + + S+P ++   F ++ N              + +TQL L EKL
Sbjct:   79 VNSNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGGKSGCMFTPIPVELTSYEPETFGLKLLQKT-VGVSPAHRPKTVPPMLDLAQISEASTKLQSLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTHEQFTQMFNANVRNLLLVITLSQLIKTQLQLNEKL 274          
The following BLAST results are available for this feature:
BLAST of CF833101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
EIF3F_ARATH2.826e-7570.98Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_PANTR2.120e-3034.90Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MACFA2.120e-3034.90Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_HUMAN2.120e-3034.90Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MOUSE2.769e-3034.90Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROAN1.680e-2736.04Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROPS6.384e-2735.53Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROPE6.384e-2735.53Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROGR6.384e-2735.71Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROYA1.857e-2635.53Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833101 ID=CF833101; Name=CF833101; organism=Citrus sinensis; type=EST; length=696bp
ACGGTGAATCCTCAGGAAGTGATTGTTGGATGGTTTTCTACAGGGTTGGG
AGTCACTGGTGGCAGTGCCTTGATCCATGAATTCTATTGTCGCGAAGTTC
CTAATCCTGTCCACCTGACTGTAGATACAGGATTCAGAAATGGAGAGGGT
ACTGTAAAAGCTTATGTTTCTGTCAATTTGTCTCTTGGAGATCGACAGCT
TGCTGCACAATTTCAAGAAATCCCTCTTGATCTTCGAATGATTGAAGCTG
AGCGAGTTGGATTCGATATTCTGAAGTCAACATCGGTTGACAAACTCCCT
AGTGATTTGGAAGGAATGGAAGTCCTGATGGAACGGCTACTAACTCTTAT
TAACGATATCTACAAATATGTTGATGACACTGTGGAAGGGCATGCTGTAC
CTGATAATAGTGTAGGGCGTATTCTTTCAGAGACTGTAGCCTCCCTTCCC
AAACTGTCACCTCCAGCTTTTGACAAGCTTGTAAATGACAGCCTACAGGA
CCAGTTGCTCTTGCTATATTTGTCAAGTATCACCAGGACCCAGCTCAGCT
TAGCAGAAAAGTTGAACACCGCTGCTCAGATGCCATAATTTCTCGCTGAC
ATATGAATTCATGTGCTAAGGCGATTTGAGTTTGAATTAATATATCACAA
ACTCTGAGGAATGTGCGTATTTACTTTCTGGAAAGGCTGTATTTTA
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