CF833115

Overview
NameCF833115
Unique NameCF833115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5829 contig Csv1_Contig5829:985..1783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.152e-49
Identity = 88/166 (53.01%), Postives = 129/166 (77.71%), Query Frame = -3
Query:  301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 798
            I  +AVALK+AS+P F+ Y KQV+ N+  +G  L  +GYSLVT GT+NHLV WDLRP G+TG+K+EK CD  +ITVNKNAV+GD++A+APGGVR+G PA+TSRGL E+DF ++ +F  R V ++L+IQ + GK + DF + + +N+D++ ++ +V++F++ F MPG
Sbjct:  314 IAGIAVALKEASSPDFQEYTKQVRRNSQTMGEELKKRGYSLVTEGTDNHLVLWDLRPQGITGSKIEKACDEAHITVNKNAVYGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVVDFLDRVVKISLDIQSKVGKKMPDFQRAIADNQDLKQIRQEVKEFSTKFGMPG 479          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.839e-48
Identity = 94/166 (56.63%), Postives = 122/166 (73.49%), Query Frame = -3
Query:  301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 798
            I  +AVALK+A +  FK YA QVK NA A+GN L  KGY LVT GT+NHL+ WDLRP  LTGNK EK  D+ NITVNKNAV GD++A++PGG+RIG+ A+TSRGL E DFE+I +F  R V+++LEIQ   GK L DF   +  +K++  L+ +VE+F+S F +PG
Sbjct:  291 IAGVAVALKEADSQEFKEYALQVKKNAAAIGNALMNKGYKLVTNGTDNHLILWDLRPKELTGNKFEKAADIANITVNKNAVHGDTNAISPGGIRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQGRVGKKLVDFVVEINKSKELLDLRKEVEEFSSKFTLPG 456          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.276e-40
Identity = 86/172 (50.00%), Postives = 116/172 (67.44%), Query Frame = -3
Query:  301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 798
            I  +AVALKQA TP F+AY +QV AN  AL   L G GY +VTGG++NHL+  DLR  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLE+DF+++  F HR + LTL+IQ   G    LK+F + L     +++ + AL+A+VE FA+ F +PG
Sbjct:  309 IAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAEEHHRAVAALRAEVESFATLFPLPG 480          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.667e-40
Identity = 88/179 (49.16%), Postives = 123/179 (68.72%), Query Frame = -3
Query:  277 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKE-YGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPGFKMSEMKY 798
            I  LAVALKQA+TP ++AY +QV +N+      L+ KGY LV+GGTENHLV  +L+  G+ G++VEK+ +L +I  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+F  AV+L L+++ E  G  LKDF + L  +     +I  LK DVE+FA  F   GF+ + MKY
Sbjct:  338 ITGLAVALKQATTPEYRAYQEQVLSNSSKFAKALSEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGFEKATMKY 516          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.177e-40
Identity = 87/171 (50.88%), Postives = 113/171 (66.08%), Query Frame = -3
Query:  301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYG--KLLKDFNKGLVNNK---DIEALKADVEKFASSFDMPG 798
            I  +AVALKQA T  FK Y  QV AN  AL   LT  GY +VTGG++NHL+  DLR  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLEKDF+++  F HR + LTL+IQ + G    LK+F + L  +K    ++AL+ +VE FAS F +PG
Sbjct:  309 IAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQAAVQALREEVESFASLFPLPG 479          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 2.844e-40
Identity = 86/172 (50.00%), Postives = 114/172 (66.28%), Query Frame = -3
Query:  301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 798
            I  +AVALKQA TP F+AY +QV AN  AL   L G GY +VTGG++NHL+  DLR  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLE+DF ++  F HR + LTL+IQ   G    LK+F + L     + + + AL+A+VE FA+ F +PG
Sbjct:  309 IAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFRKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAEEHQRAVTALRAEVESFATLFPLPG 480          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.851e-40
Identity = 84/181 (46.41%), Postives = 124/181 (68.51%), Query Frame = -3
Query:  271 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKE-YGKLLKDFNKGLVNNKDIEA----LKADVEKFASSFDMPGFKMSEMKYKD 798
            I  LAVALKQA+T  +KAY +QV +N+      L  +GY LV+GGT+NHLV  +L+P G+ G++VEK+ +  +I  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+F +AVT+ L+++ E  G  LKDF   + ++  I++    L+ +VE+FA  F   GF+   MKYK+
Sbjct:  337 ITGLAVALKQATTSEYKAYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN 517          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.851e-40
Identity = 87/171 (50.88%), Postives = 112/171 (65.50%), Query Frame = -3
Query:  301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYG--KLLKDFNKGLVNNK---DIEALKADVEKFASSFDMPG 798
            I  +AVALKQA T  FK Y  QV AN  AL   LT  GY +VTGG++NHL+  DLR  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLEKDF+++  F HR + LTL+IQ + G    LK+F + L  +K    ++AL+  VE FAS F +PG
Sbjct:  309 IAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQGAVQALREKVESFASLFPLPG 479          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.411e-39
Identity = 84/172 (48.84%), Postives = 113/172 (65.70%), Query Frame = -3
Query:  301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 798
            I  +AVALKQA TP FK Y +QV AN  AL   L   GY +VTGG++NHL+  DLR  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLEKDF+++  F HR + LT++IQ + G    LK+F + L     + + + AL+ +VE FA+ F +PG
Sbjct:  309 IAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPG 480          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.407e-39
Identity = 84/172 (48.84%), Postives = 113/172 (65.70%), Query Frame = -3
Query:  301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYG--KLLKDFNKGLVNNKDIEA----LKADVEKFASSFDMPG 798
            I  +AVALKQA T  FK Y  QV AN  AL + LT  GY +VTGG++NHL+  DLR  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLE+DF+++  F HR + LTL+IQ        LK+F + L  ++ I++    L+ +VE FAS+F +PG
Sbjct:  303 IAGVAVALKQAMTTEFKIYQLQVLANCRALSDALTELGYKIVTGGSDNHLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHMATKATLKEFKEKLAGDEKIQSAVATLREEVENFASNFSLPG 474          
The following BLAST results are available for this feature:
BLAST of CF833115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC2_DICDI1.152e-4953.01Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYC1_DICDI4.839e-4856.63Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]
GLYC_BOVIN1.276e-4050.00Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYM_PEA1.667e-4049.16Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_HUMAN2.177e-4050.88Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYC_SHEEP2.844e-4050.00Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]
GLYM_ARATH4.851e-4046.41Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_PONAB4.851e-4050.88Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYC_RABIT1.411e-3948.84Serine hydroxymethyltransferase, cytosolic OS=Oryc... [more]
GLYC_MOUSE2.407e-3948.84Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833115 ID=CF833115; Name=CF833115; organism=Citrus sinensis; type=EST; length=800bp
TTTTTTTTTTTTTTTTTAAGAAATAAAATACATAAATTTGTTCTTTTATT
TGTAGATGAACAATCATCATTTGACCAAAGAGAAACGGATCTCACTTTCA
CAATATGGTGGGTACCAATTAAAAAAAAAAAAAAAGTTAAAACGAAAGCG
TTTAAACCTAGGACAACAAAAGGCAAAGATGCATGCAATTTTTTTTCTTC
TCTTTCTGTTTTTCAACACTAAAGAGTTGCTAACAACACAGTAACAATAA
TGATGATACTTTGAGACCTAATCCTTGTACTTCATCTCGGACATTTTAAA
GCCGGGCATGTCAAATGAGCTGGCGAACTTCTCAACATCAGCCTTGAGGG
CCTCGATGTCCTTGTTGTTCACCAAACCCTTGTTGAAGTCCTTCAAGAGC
TTTCCATACTCCTTTTGAATTTCCAACGTGAGGGTCACAGCGCGGTGAAA
AAACTCTCCAATTTGCTCGAAGTCCTTCTCCAACAAACCTCTGGAAGTCA
TGGCAGGAGTACCGATTCTTACTCCTCCAGGGGCCAAGGCACTGCTGTCA
CCAAACACAGCATTCTTGTTCACAGTAATGTTGCAAAGGTCACAGAGCTT
CTCAACCTTATTGCCAGTCAATCCAAGAGGGCGTAAATCCCAAAAAACAA
GGTGGTTCTCAGTTCCACCAGTGACAAGGCTGTATCCCTTGCCCGTCAGG
TAGTTCCCAAGTGCAACTGCATTGGCCTTGACTTGTTTCGCATAGGCCTT
GAATGCAGGGGTCGAGGCCTGTTTCAGGGCAACAGCTAGAGCACCAATCT
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