CF833115
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 1.152e-49 Identity = 88/166 (53.01%), Postives = 129/166 (77.71%), Query Frame = -3 Query: 301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 798 I +AVALK+AS+P F+ Y KQV+ N+ +G L +GYSLVT GT+NHLV WDLRP G+TG+K+EK CD +ITVNKNAV+GD++A+APGGVR+G PA+TSRGL E+DF ++ +F R V ++L+IQ + GK + DF + + +N+D++ ++ +V++F++ F MPG Sbjct: 314 IAGIAVALKEASSPDFQEYTKQVRRNSQTMGEELKKRGYSLVTEGTDNHLVLWDLRPQGITGSKIEKACDEAHITVNKNAVYGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVVDFLDRVVKISLDIQSKVGKKMPDFQRAIADNQDLKQIRQEVKEFSTKFGMPG 479
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 4.839e-48 Identity = 94/166 (56.63%), Postives = 122/166 (73.49%), Query Frame = -3 Query: 301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 798 I +AVALK+A + FK YA QVK NA A+GN L KGY LVT GT+NHL+ WDLRP LTGNK EK D+ NITVNKNAV GD++A++PGG+RIG+ A+TSRGL E DFE+I +F R V+++LEIQ GK L DF + +K++ L+ +VE+F+S F +PG Sbjct: 291 IAGVAVALKEADSQEFKEYALQVKKNAAAIGNALMNKGYKLVTNGTDNHLILWDLRPKELTGNKFEKAADIANITVNKNAVHGDTNAISPGGIRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQGRVGKKLVDFVVEINKSKELLDLRKEVEEFSSKFTLPG 456
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3) HSP 1 Score: 166.777 bits (421), Expect = 1.276e-40 Identity = 86/172 (50.00%), Postives = 116/172 (67.44%), Query Frame = -3 Query: 301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 798 I +AVALKQA TP F+AY +QV AN AL L G GY +VTGG++NHL+ DLR G G + EK+ + C+I NKN GD SAL P G+R+GTPA+TSRGLLE+DF+++ F HR + LTL+IQ G LK+F + L +++ + AL+A+VE FA+ F +PG Sbjct: 309 IAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAEEHHRAVAALRAEVESFATLFPLPG 480
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.667e-40 Identity = 88/179 (49.16%), Postives = 123/179 (68.72%), Query Frame = -3 Query: 277 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKE-YGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPGFKMSEMKY 798 I LAVALKQA+TP ++AY +QV +N+ L+ KGY LV+GGTENHLV +L+ G+ G++VEK+ +L +I NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+F AV+L L+++ E G LKDF + L + +I LK DVE+FA F GF+ + MKY Sbjct: 338 ITGLAVALKQATTPEYRAYQEQVLSNSSKFAKALSEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGFEKATMKY 516
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 2.177e-40 Identity = 87/171 (50.88%), Postives = 113/171 (66.08%), Query Frame = -3 Query: 301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYG--KLLKDFNKGLVNNK---DIEALKADVEKFASSFDMPG 798 I +AVALKQA T FK Y QV AN AL LT GY +VTGG++NHL+ DLR G G + EK+ + C+I NKN GD SAL P G+R+GTPA+TSRGLLEKDF+++ F HR + LTL+IQ + G LK+F + L +K ++AL+ +VE FAS F +PG Sbjct: 309 IAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQAAVQALREEVESFASLFPLPG 479
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3) HSP 1 Score: 165.622 bits (418), Expect = 2.844e-40 Identity = 86/172 (50.00%), Postives = 114/172 (66.28%), Query Frame = -3 Query: 301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 798 I +AVALKQA TP F+AY +QV AN AL L G GY +VTGG++NHL+ DLR G G + EK+ + C+I NKN GD SAL P G+R+GTPA+TSRGLLE+DF ++ F HR + LTL+IQ G LK+F + L + + + AL+A+VE FA+ F +PG Sbjct: 309 IAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFRKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAEEHQRAVTALRAEVESFATLFPLPG 480
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 4.851e-40 Identity = 84/181 (46.41%), Postives = 124/181 (68.51%), Query Frame = -3 Query: 271 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKE-YGKLLKDFNKGLVNNKDIEA----LKADVEKFASSFDMPGFKMSEMKYKD 798 I LAVALKQA+T +KAY +QV +N+ L +GY LV+GGT+NHLV +L+P G+ G++VEK+ + +I NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+F +AVT+ L+++ E G LKDF + ++ I++ L+ +VE+FA F GF+ MKYK+ Sbjct: 337 ITGLAVALKQATTSEYKAYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN 517
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 4.851e-40 Identity = 87/171 (50.88%), Postives = 112/171 (65.50%), Query Frame = -3 Query: 301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYG--KLLKDFNKGLVNNK---DIEALKADVEKFASSFDMPG 798 I +AVALKQA T FK Y QV AN AL LT GY +VTGG++NHL+ DLR G G + EK+ + C+I NKN GD SAL P G+R+GTPA+TSRGLLEKDF+++ F HR + LTL+IQ + G LK+F + L +K ++AL+ VE FAS F +PG Sbjct: 309 IAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQGAVQALREKVESFASLFPLPG 479
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2) HSP 1 Score: 163.31 bits (412), Expect = 1.411e-39 Identity = 84/172 (48.84%), Postives = 113/172 (65.70%), Query Frame = -3 Query: 301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 798 I +AVALKQA TP FK Y +QV AN AL L GY +VTGG++NHL+ DLR G G + EK+ + C+I NKN GD SAL P G+R+GTPA+TSRGLLEKDF+++ F HR + LT++IQ + G LK+F + L + + + AL+ +VE FA+ F +PG Sbjct: 309 IAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPG 480
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2) HSP 1 Score: 162.54 bits (410), Expect = 2.407e-39 Identity = 84/172 (48.84%), Postives = 113/172 (65.70%), Query Frame = -3 Query: 301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYG--KLLKDFNKGLVNNKDIEA----LKADVEKFASSFDMPG 798 I +AVALKQA T FK Y QV AN AL + LT GY +VTGG++NHL+ DLR G G + EK+ + C+I NKN GD SAL P G+R+GTPA+TSRGLLE+DF+++ F HR + LTL+IQ LK+F + L ++ I++ L+ +VE FAS+F +PG Sbjct: 303 IAGVAVALKQAMTTEFKIYQLQVLANCRALSDALTELGYKIVTGGSDNHLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHMATKATLKEFKEKLAGDEKIQSAVATLREEVENFASNFSLPG 474 The following BLAST results are available for this feature:
BLAST of CF833115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF833115 ID=CF833115; Name=CF833115; organism=Citrus sinensis; type=EST; length=800bpback to top |