CF833459

Overview
NameCF833459
Unique NameCF833459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF833459 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.487e-26
Identity = 57/133 (42.86%), Postives = 79/133 (59.40%), Query Frame = -3 
Query:  309 FGTLFIELCFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 707
            FG +FI+L FIL+SIW  + YY+FGF                  L Y HLC ED+ W W++F  SG  A+Y  +Y+I+Y    LQ ++G  S +LY GY++IM +   L TGTIGF   F+FV  ++S VK+D
Sbjct:  531 FGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 662
[Close]
BLAST of CF833459 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 57/133 (42.86%), Postives = 79/133 (59.40%), Query Frame = -3 
Query:  309 FGTLFIELCFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 707
            FG +FI+L FIL+SIW  + YY+FGF                  L Y HLC ED+ W W++F  SG  A+Y  +Y+I+Y    LQ ++G  S +LY GY++IM +   L TGTIGF   F+FV  ++S VK+D
Sbjct:  532 FGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
[Close]
BLAST of CF833459 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 56/133 (42.11%), Postives = 79/133 (59.40%), Query Frame = -3 
Query:  309 FGTLFIELCFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 707
            FG +FI+L FIL+SIW  + YY+FGF                  L Y HLC ED+ W W++F  SG  A+Y  +Y+++Y    LQ ++G  S +LY GY++IM +   L TGTIGF   F+FV  ++S VK+D
Sbjct:  532 FGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
[Close]
BLAST of CF833459 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 56/133 (42.11%), Postives = 79/133 (59.40%), Query Frame = -3 
Query:  309 FGTLFIELCFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 707
            FG +FI+L FIL+SIW  + YY+FGF                  L Y HLC ED+ W W++F  SG  A+Y  +Y+++Y    LQ ++G  S +LY GY++IM +   L TGTIGF   F+FV  ++S VK+D
Sbjct:  532 FGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQ-ITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
[Close]
BLAST of CF833459 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.540e-26
Identity = 56/133 (42.11%), Postives = 78/133 (58.65%), Query Frame = -3 
Query:  309 FGTLFIELCFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 707
            FG +FIEL FI S+IW  +FYY+FGF                  + Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  L TGTIGF  ++ FV  ++++VKID
Sbjct:  512 FGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643
[Close]
BLAST of CF833459 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.540e-26
Identity = 56/133 (42.11%), Postives = 78/133 (58.65%), Query Frame = -3 
Query:  309 FGTLFIELCFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 707
            FG +FIEL FI S+IW  +FYY+FGF                  + Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  L TGTIGF  ++ FV  ++++VKID
Sbjct:  511 FGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642
[Close]
BLAST of CF833459 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.540e-26
Identity = 56/133 (42.11%), Postives = 78/133 (58.65%), Query Frame = -3 
Query:  309 FGTLFIELCFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 707
            FG +FIEL FI S+IW  +FYY+FGF                  + Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  L TGTIGF  ++ FV  ++++VKID
Sbjct:  512 FGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643
[Close]
BLAST of CF833459 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.540e-26
Identity = 56/133 (42.11%), Postives = 78/133 (58.65%), Query Frame = -3 
Query:  309 FGTLFIELCFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 707
            FG +FIEL FI S+IW  +FYY+FGF                  + Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  L TGTIGF  ++ FV  ++++VKID
Sbjct:  511 FGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642
[Close]
BLAST of CF833459 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.540e-26
Identity = 56/133 (42.11%), Postives = 78/133 (58.65%), Query Frame = -3 
Query:  309 FGTLFIELCFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 707
            FG +FIEL FI S+IW  +FYY+FGF                  + Y  LC ED+RWWW+ F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  L TGTIGF  ++ FV  ++++VKID
Sbjct:  511 FGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642
[Close]
BLAST of CF833459 vs. ExPASy Swiss-Prot
Match: PHG1A_DICDI (Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.970e-24
Identity = 52/133 (39.10%), Postives = 80/133 (60.15%), Query Frame = -3 
Query:  309 FGTLFIELCFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 707
            FG +FIEL FIL+S+W  +FYY+FGF                  + Y  LC ED  WWW++F  +GS +LY+F+YS+++  F    ++  +S+LL   YS IM++A    TGTIGF + ++ V  ++SS+ I+
Sbjct:  511 FGAVFIELHFILTSLWDNQFYYIFGFLFIVLMILIVTSAEISIVMCYFQLCAEDHHWWWRSFLTAGSSSLYMFIYSVSF--FRYLGITKFISSLLDFSYSFIMSLAFAALTGTIGFYSCYFLVRKIYSSIHIN 641
The following BLAST results are available for this feature:
BLAST of CF833459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
TM9S2_MOUSE2.487e-2642.86Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_RAT3.248e-2642.86Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]
TM9S2_PONAB3.248e-2642.11Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]
TM9S2_HUMAN3.248e-2642.11Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]
TM9S4_RAT5.540e-2642.11Transmembrane 9 superfamily member 4 OS=Rattus nor... [more]
TM9S4_PONAB5.540e-2642.11Transmembrane 9 superfamily member 4 OS=Pongo abel... [more]
TM9S4_MOUSE5.540e-2642.11Transmembrane 9 superfamily member 4 OS=Mus muscul... [more]
TM9S4_HUMAN5.540e-2642.11Transmembrane 9 superfamily member 4 OS=Homo sapie... [more]
TM9S4_BOVIN5.540e-2642.11Transmembrane 9 superfamily member 4 OS=Bos taurus... [more]
PHG1A_DICDI3.970e-2439.10Putative phagocytic receptor 1a OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03K13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833459 ID=CF833459; Name=CF833459; organism=Citrus sinensis; type=EST; length=709bp
TTTTTTTTAAGAAAAAGACTATTTAAATTCTCTCCATTGATAAAGCTATC
GAAAGTACAAGGAGAGCAAAACCAACCAATTACAATTTTGTAGAACAGCC
AATGTAAACTGAGATAGGTAATCCAAAATGATGCTCAAAACTAGTAAAAT
AGGAAAAACAAGAACAACAATATAGGGGAATGAGACAGCATATCATAATC
TCTAAATCTATCAAAAGGAAGGCTGAACCAAGAAAACTCCCTCTTCCTAA
CGTACTGGAGTCTTCTCTACCTGGTCGATGAAGATTGATTCACAAACATA
ATTTTTCAGTCAATCTTTACAGACGAGAAAAGGTAATGGACGAAGTAAAA
AGACGTAAGGAAGCCAATGGTGCCGGTTGCCAACATGATTGCGACTGCCA
TGATTAATGAATAACCAAGATATAGTAGAGCAGACACGGGTCCACTCAAA
CTCTGCAGGTCAAATACCAAATAGTTGATAGAGTACAGGAACACATACAG
TGCAACTGATCCTGAAGCAAAGAAAGCCTTCCACCACCAACGCCAATCCT
CCACACAAAGATGCATGTATGTTAGGACCACAGACACTTCAGCGCAAACA
ACAACCAGCAACAAAAGAACTATCAGCAGAAAACCAAAGACATAATAGAA
CCTTCCTAGCCAAATGCTAGAAAGAATGAAGCAAAGTTCTATAAAGAGGG
TTCCAAACG
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