CF834049

Overview
NameCF834049
Unique NameCF834049
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1032 contig Csv1_Contig1032:37..615. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834049 vs. ExPASy Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae GN=UAF30 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.703e-13
Identity = 37/88 (42.05%), Postives = 58/88 (65.91%), Query Frame = 3
Query:  189 KRGAPTRPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFVK 452
            K+G  ++    ++   +S +LA  LG  E +R++ VR++WA++K HNLQNP NK+EILCDEKL+ I  GK +    E+ K+L+ H  +
Sbjct:  110 KKGTVSKSPISTRKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELIL-GK-STNMFEMHKILASHMTE 195          
BLAST of CF834049 vs. ExPASy Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe GN=spp27 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.513e-11
Identity = 30/68 (44.12%), Postives = 46/68 (67.65%), Query Frame = 3
Query:  189 KRGAPTRPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFE 392
            KR        ++K   +SP LA+FLG  + SR   V+++W ++K H+LQ+P +KR ILCD+KLK++FE
Sbjct:  107 KRNQDPANNPLNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFE 174          
BLAST of CF834049 vs. ExPASy Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae GN=TRI1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 3
Query:  237 VSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPH 443
            +S  L KFLG+ E  R+  V+ IW ++K H+LQNP+++REILCDEK++ IF GK    F  + KLL+ H
Sbjct:  126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIF-GKKMTMF-SMNKLLTKH 192          
The following BLAST results are available for this feature:
BLAST of CF834049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
UAF30_YEAST4.703e-1342.05Upstream activation factor subunit UAF30 OS=Saccha... [more]
UAF30_SCHPO1.513e-1144.12Upstream activation factor subunit spp27 OS=Schizo... [more]
TRI1_YEAST2.581e-1149.28Protein TRI1 OS=Saccharomyces cerevisiae GN=TRI1 P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_04N03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04N03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834049 ID=CF834049; Name=CF834049; organism=Citrus sinensis; type=EST; length=579bp
GTCGGAAGCCCCCTTTAAAGCAAACTAACAAATACTTGGTGATCGCAATG
TCCTCAGCTGCCGCTAGGGTTTTCAACGGCTGCCGGGCCCTCCTGGCTCC
GGCCAAGTCCTCTGCCGCTGCCTCCTCAGCGGCTTCCACTAAAGCGAAAT
CAAAAACAACGAAGAAACCCAGAGCCAAATCGCCAGTAAAGCGCGGTGCA
CCTACTCGACCTACTGGAATTTCCAAGGTGAGCCCTGTCTCTCCTGCGCT
TGCGAAATTTCTCGGCGCCCCTGAAGCCTCCCGCTCCGACGCCGTCCGTC
AGATCTGGGCCCACGTCAAGACCCACAACCTCCAGAATCCTGAGAACAAG
CGGGAAATCCTCTGTGATGAGAAGCTGAAAGCCATCTTCGAAGGGAAAAA
TGCTGTTGGATTCCTGGAGATTGGGAAACTGTTGAGCCCCCATTTCGTGA
AGACTGCTTGAGGTCCTTGACTGCTGATTCTGATAACAAGTACAGGTGTT
TGGCTTCAAATTGCTCTCCCAACTCCATGAGGGAGCTCTTGTCACTTTTC
ATAACCTTTTGTTGATGTAATTGCGTTCT
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