CF834086

Overview
NameCF834086
Unique NameCF834086
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1516 contig Csv1_Contig1516:23..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_ORYSJ (40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2)

HSP 1 Score: 315.464 bits (807), Expect = 1.692e-85
Identity = 156/182 (85.71%), Postives = 166/182 (91.21%), Query Frame = 1 
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYDIKAPS F VRN+GKTLV+RTQGTKIASEGLKHRVFEVSL DL N+E+ AYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLV+KW TLIEA+VDVKTTD + LRLFCIGFTKR PNQVKRTCYAQ SQIRQIRRKM EIM  QA+SCDLK LV KFI EVIG+EIEKATSSI+PLQN
Sbjct:   28 DWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQN 209
[Close]
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2)

HSP 1 Score: 315.464 bits (807), Expect = 1.692e-85
Identity = 155/182 (85.16%), Postives = 167/182 (91.76%), Query Frame = 1 
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYDIKAPS F  RNVGKTLVTRTQGTKIASEGLKHRVFEVSL DL N+E+H+YRKIRLRAEDVQGKNVLTNFWGM  TTDKLRSLV+KW +LIEA+VDVKTTDNFTLR+FCIGFTK+  NQVKRTCYAQ+SQI+QIRRKMREIMV QA +CDLK LV+KFI E IGREIEKATSSIYPLQN
Sbjct:   28 DWYDIKAPSLFITRNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQNDEDHSYRKIRLRAEDVQGKNVLTNFWGMDVTTDKLRSLVKKWQSLIEAHVDVKTTDNFTLRMFCIGFTKKRANQVKRTCYAQSSQIKQIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKATSSIYPLQN 209
[Close]
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A2_VITVI (40S ribosomal protein S3a-2 OS=Vitis vinifera GN=GSVIVT00031140001 PE=3 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 3.769e-85
Identity = 155/182 (85.16%), Postives = 166/182 (91.21%), Query Frame = 1 
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYDIKAPS F VRNVGKTLV+RTQGTKIASEGLKHRVFE+SL DL N+E+HAYRKIRLRAEDVQGKNVLTNFWGM FTTDKLRSLVRKW TLIEA+VDVKTTDN+TLR+FCI FTK+  NQ K+T YAQ+SQIRQIRRKMREIM  QAASCDLK LV KFI E+IGREIEKATSSIYPLQN
Sbjct:   28 DWYDIKAPSIFSVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQNDEDHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIAFTKKRQNQNKKTSYAQSSQIRQIRRKMREIMTTQAASCDLKELVRKFIPEMIGREIEKATSSIYPLQN 209
[Close]
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_CICAR (40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 8.396e-85
Identity = 154/182 (84.62%), Postives = 169/182 (92.86%), Query Frame = 1 
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYDIKAPS F+V+NVGKTLV+RTQGTKIASEGLKHRVFE+SL DL  +E++A+RKIRLRAEDVQGKNVLTNF+GM FTTDKLRSLVRKW TLIEA+VDVKTTDN+TLR+FCIGFTKR  NQVKRTCYAQ+SQIRQIRRKMREIMV QA SCDLK LV KFI E+IG+EIEKATSSIYPLQN
Sbjct:   28 DWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQGDEDNAFRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQN 209
[Close]
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_CATRO (40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4)

HSP 1 Score: 311.612 bits (797), Expect = 2.443e-84
Identity = 152/182 (83.52%), Postives = 167/182 (91.76%), Query Frame = 1 
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYDIKAPS F VRNVGKTLVTRTQGTKIASEGL+HRVFE+SL DL  +E+H++RKIRLRAED+QGKNVLTNFWGM FTTDKLRSLVRKW +LIEA+VDVKTTD++TLR+FCIGFTK+  NQ KRTCYAQ+SQIRQIRRKMREIMV QA SCDLK LV+KFI E IGREIEKATSSIYPLQN
Sbjct:   28 DWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEGLEHRVFEISLADLQGDEDHSFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQN 209
[Close]
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A1_VITVI (40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 7.858e-83
Identity = 152/182 (83.52%), Postives = 163/182 (89.56%), Query Frame = 1 
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYDIKAPS F VRNVGKTLV+RTQGTKIASEGLKHRVFE+SL DL  +E+ AYRKIRLRAEDVQG+NVLTNFWGM FTTDKLRSLVRKW TLIEA+VDVKTTDN+TLRLFCI FTK+  NQ K+TCYAQ+SQIRQIRRKMREIM   A SCDLK LV+KFI E IGREIEKATSSIYPLQN
Sbjct:   28 DWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQADEDQAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFCIAFTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATSCDLKELVKKFIPESIGREIEKATSSIYPLQN 209
[Close]
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_TOBAC (40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.482e-81
Identity = 149/182 (81.87%), Postives = 164/182 (90.11%), Query Frame = 1 
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYDIKAPS F ++NVGKTLVTRTQGTKIASEGLKHRVFEVSL DL  +E+ ++RKIRLRAEDVQGKNVLTNFWGM FTTDKLRSLV+KW TLIEA+VDVKTTD++TLR+FCI FTK+ PNQ KRTCYAQ+SQIRQIRRKM EIM  QA+SCDLK LV KFI E IGREIEKATSSI+PLQN
Sbjct:   28 DWYDIKAPSVFDIKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQKDEDQSFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRMFCIAFTKKRPNQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQN 209
[Close]
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A2_ARATH (40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3)

HSP 1 Score: 301.982 bits (772), Expect = 1.936e-81
Identity = 148/182 (81.32%), Postives = 161/182 (88.46%), Query Frame = 1 
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYD+KAP  F  RNVGKTLV+RTQGTKIASEGLKHRVFEVSL DL N+E++AYRKIRLRAEDVQG+NVLT FWGM FTTDKLRSLV+KW TLIEA+VDVKTTD +TLR+FCI FTKR  NQVKRTCYAQ+SQIRQIRRKM EIMV +A+SCDLK LV KFI E IGREIEKAT  IYPLQN
Sbjct:   28 DWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDNAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQN 209
[Close]
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A1_ARATH (40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=1 SV=3)

HSP 1 Score: 301.212 bits (770), Expect = 3.302e-81
Identity = 148/182 (81.32%), Postives = 162/182 (89.01%), Query Frame = 1 
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYD+KAPS F  RNVGKTLV+RTQGTKIASEGLKHRVFEVSL DL  +E++AYRKIRLRAEDVQG+NVL  FWGM FTTDKLRSLV+KW TLIEA+VDVKTTD++TLRLFCI FTKR  NQVKRTCYAQ+SQIRQIRRKMR+IMV +A+SCDLK LV KFI E IGREIEKAT  IYPLQN
Sbjct:   28 DWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDNAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQN 209
[Close]
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_DAUCA (40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.062e-79
Identity = 148/182 (81.32%), Postives = 163/182 (89.56%), Query Frame = 1 
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYDIKAP+ F+ +NVGKTLV+RTQGTKIASEGLKHRVFEV L DL  +E+ AYRKIRLRAEDVQGKNVLTNF+GM FTTDKLRSLVRKW TLIEA+VDVKTTD++TLR+FCIGFTK+  NQ KRTCYAQ+SQIRQIRRKM EIM  QA+SCDLK LV KFI E IGREIEKATSSI+PLQN
Sbjct:   28 DWYDIKAPNVFQNKNVGKTLVSRTQGTKIASEGLKHRVFEVCLADLQGDEDQAYRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQN 209
The following BLAST results are available for this feature:
BLAST of CF834086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
RS3A_ORYSJ1.692e-8585.7140S ribosomal protein S3a OS=Oryza sativa subsp. j... [more]
RS3A_HELAN1.692e-8585.1640S ribosomal protein S3a OS=Helianthus annuus GN=... [more]
RS3A2_VITVI3.769e-8585.1640S ribosomal protein S3a-2 OS=Vitis vinifera GN=G... [more]
RS3A_CICAR8.396e-8584.6240S ribosomal protein S3a OS=Cicer arietinum PE=2 ... [more]
RS3A_CATRO2.443e-8483.5240S ribosomal protein S3a OS=Catharanthus roseus G... [more]
RS3A1_VITVI7.858e-8383.5240S ribosomal protein S3a-1 OS=Vitis vinifera GN=G... [more]
RS3A_TOBAC1.482e-8181.8740S ribosomal protein S3a OS=Nicotiana tabacum GN=... [more]
RS3A2_ARATH1.936e-8181.3240S ribosomal protein S3a-2 OS=Arabidopsis thalian... [more]
RS3A1_ARATH3.302e-8181.3240S ribosomal protein S3a-1 OS=Arabidopsis thalian... [more]
RS3A_DAUCA1.062e-7981.3240S ribosomal protein S3a OS=Daucus carota GN=cyc0... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04O06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834086 ID=CF834086; Name=CF834086; organism=Citrus sinensis; type=EST; length=682bp
CGAGCTAGGACTCCTTTACAGCGGAGCCGTCTCTTGAGCAGCAGCTGCAC
AAACCTGGCCGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGAAAGGAG
GCAAGAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTATGATATC
AAGGCTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGTTAC
CCGGACTCAGGGTACCAAGATTGCATCAGAAGGACTCAAACACAGAGTGT
TTGAGGTATCACTAGGTGATCTTCTCAACGAAGAAGAGCACGCTTACAGG
AAGATCAGACTGAGAGCTGAAGATGTCCAAGGGAAGAATGTGTTGACTAA
CTTCTGGGGCATGAGTTTCACTACAGACAAGCTGAGGTCTTTGGTTAGGA
AGTGGCATACCTTGATTGAAGCTTATGTGGATGTCAAGACCACTGATAAC
TTCACATTGAGATTGTTCTGCATTGGATTCACCAAGAGACTTCCAAACCA
GGTTAAGAGGACTTGCTATGCACAGACCAGCCAGATTAGACAGATTCGCC
GCAAGATGAGGGAGATCATGGTTGCTCAGGCAGCATCTTGTGATCTTAAG
AGCTTGGTCGAAAAGTTCATTGCTGAAGTGATTGGAAGAGAGATTGAGAA
GGCAACCTCAAGCATATATCCCTTACAAAATG
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