CF834589

Overview
NameCF834589
Unique NameCF834589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834589 vs. ExPASy Swiss-Prot
Match: PHG1A_DICDI (Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.064e-50
Identity = 99/179 (55.31%), Postives = 120/179 (67.04%), Query Frame = -1 
Query:  274 VYVGSLVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 810
            V++GS    KKP  EDPV+TN+IPRQ+P+Q WYMNP  SIL+GGILPFGAVFIEL FILTS+W NQ                VT AEI+IV+CYFQLC+ED+ WWWRS+LT+GSS               L ITK +S +L F Y  I S AF  LTGTIGFY+C++  R IYSS+ I+
Sbjct:  464 VFLGSYFASKKPVPEDPVRTNQIPRQVPDQIWYMNPYLSILMGGILPFGAVFIELHFILTSLWDNQFYYIFGFLFIVLMILIVTSAEISIVMCYFQLCAEDHHWWWRSFLTAGSSSLYMFIYSVSFFRY-LGITKFISSLLDFSYSFIMSLAFAALTGTIGFYSCYFLVRKIYSSIHIN 641
[Close]
BLAST of CF834589 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.307e-50
Identity = 94/178 (52.81%), Postives = 119/178 (66.85%), Query Frame = -1 
Query:  274 YVGSLVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 807
            ++G+  GFKK AIE PV+TN+IPRQIPEQ++Y  P+  I++GGILPFG +FI+LFFIL SIW +Q                +TC+E TI+LCYF LC+EDY W WRS+LTSG +             +KL+IT   S ILYFGY +I    FF+ TGTIGF+ACFWF   IYS VK+D
Sbjct:  486 FIGAYFGFKKNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
[Close]
BLAST of CF834589 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.307e-50
Identity = 94/178 (52.81%), Postives = 119/178 (66.85%), Query Frame = -1 
Query:  274 YVGSLVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 807
            ++G+  GFKK AIE PV+TN+IPRQIPEQ++Y  P+  I++GGILPFG +FI+LFFIL SIW +Q                +TC+E TI+LCYF LC+EDY W WRS+LTSG +             +KL+IT   S ILYFGY +I    FF+ TGTIGF+ACFWF   IYS VK+D
Sbjct:  486 FIGAYFGFKKNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
[Close]
BLAST of CF834589 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.307e-50
Identity = 94/178 (52.81%), Postives = 119/178 (66.85%), Query Frame = -1 
Query:  274 YVGSLVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 807
            ++G+  GFKK AIE PV+TN+IPRQIPEQ++Y  P+  I++GGILPFG +FI+LFFIL SIW +Q                +TC+E TI+LCYF LC+EDY W WRS+LTSG +             +KL+IT   S ILYFGY +I    FF+ TGTIGF+ACFWF   IYS VK+D
Sbjct:  485 FIGAYFGFKKNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 662
[Close]
BLAST of CF834589 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.307e-50
Identity = 94/178 (52.81%), Postives = 119/178 (66.85%), Query Frame = -1 
Query:  274 YVGSLVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 807
            ++G+  GFKK AIE PV+TN+IPRQIPEQ++Y  P+  I++GGILPFG +FI+LFFIL SIW +Q                +TC+E TI+LCYF LC+EDY W WRS+LTSG +             +KL+IT   S ILYFGY +I    FF+ TGTIGF+ACFWF   IYS VK+D
Sbjct:  486 FIGAYFGFKKNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
[Close]
BLAST of CF834589 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.488e-48
Identity = 89/179 (49.72%), Postives = 119/179 (66.48%), Query Frame = -1 
Query:  274 VYVGSLVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 810
            VY+G   GF+K   ++PV+TN+IPRQIPEQ WYMN    IL+ GILPFGA+FIELFFI ++IW NQ                V+C++I+IV+ YFQLC+EDY+WWWR++L SG S              KL+I + +  +LYFGY  +   +F++LTGTIGFYA + F R IY++VKID
Sbjct:  465 VYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643
[Close]
BLAST of CF834589 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.488e-48
Identity = 89/179 (49.72%), Postives = 119/179 (66.48%), Query Frame = -1 
Query:  274 VYVGSLVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 810
            VY+G   GF+K   ++PV+TN+IPRQIPEQ WYMN    IL+ GILPFGA+FIELFFI ++IW NQ                V+C++I+IV+ YFQLC+EDY+WWWR++L SG S              KL+I + +  +LYFGY  +   +F++LTGTIGFYA + F R IY++VKID
Sbjct:  464 VYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642
[Close]
BLAST of CF834589 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.488e-48
Identity = 89/179 (49.72%), Postives = 119/179 (66.48%), Query Frame = -1 
Query:  274 VYVGSLVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 810
            VY+G   GF+K   ++PV+TN+IPRQIPEQ WYMN    IL+ GILPFGA+FIELFFI ++IW NQ                V+C++I+IV+ YFQLC+EDY+WWWR++L SG S              KL+I + +  +LYFGY  +   +F++LTGTIGFYA + F R IY++VKID
Sbjct:  465 VYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643
[Close]
BLAST of CF834589 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 6.488e-48
Identity = 89/179 (49.72%), Postives = 119/179 (66.48%), Query Frame = -1 
Query:  274 VYVGSLVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 810
            VY+G   GF+K   ++PV+TN+IPRQIPEQ WYMN    IL+ GILPFGA+FIELFFI ++IW NQ                V+C++I+IV+ YFQLC+EDY+WWWR++L SG S              KL+I + +  +LYFGY  +   +F++LTGTIGFYA + F R IY++VKID
Sbjct:  464 VYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642
[Close]
BLAST of CF834589 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 6.488e-48
Identity = 89/179 (49.72%), Postives = 119/179 (66.48%), Query Frame = -1 
Query:  274 VYVGSLVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 810
            VY+G   GF+K   ++PV+TN+IPRQIPEQ WYMN    IL+ GILPFGA+FIELFFI ++IW NQ                V+C++I+IV+ YFQLC+EDY+WWWR++L SG S              KL+I + +  +LYFGY  +   +F++LTGTIGFYA + F R IY++VKID
Sbjct:  464 VYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642
The following BLAST results are available for this feature:
BLAST of CF834589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PHG1A_DICDI4.064e-5055.31Putative phagocytic receptor 1a OS=Dictyostelium d... [more]
TM9S2_RAT5.307e-5052.81Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]
TM9S2_PONAB5.307e-5052.81Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]
TM9S2_MOUSE5.307e-5052.81Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_HUMAN5.307e-5052.81Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]
TM9S4_RAT6.488e-4849.72Transmembrane 9 superfamily member 4 OS=Rattus nor... [more]
TM9S4_PONAB6.488e-4849.72Transmembrane 9 superfamily member 4 OS=Pongo abel... [more]
TM9S4_MOUSE6.488e-4849.72Transmembrane 9 superfamily member 4 OS=Mus muscul... [more]
TM9S4_HUMAN6.488e-4849.72Transmembrane 9 superfamily member 4 OS=Homo sapie... [more]
TM9S4_BOVIN6.488e-4849.72Transmembrane 9 superfamily member 4 OS=Bos taurus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05M16_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834589 ID=CF834589; Name=CF834589; organism=Citrus sinensis; type=EST; length=810bp
TTTTTTTTTTTTTTTTGATAAGAAAGAATATATGATTAAAAGTCACCATT
TCACTGATAGGGACATCCTATAACAGAACGGTGGTGTACGACGAAAAATT
AAGAATAAAATATTGTGTAAAAAACAGGATAATAACCTTGTCTCCATACA
AAAATGAGCATGAAAGTTCACATCTGAAAGGCATAATTATATCATACTCC
TGAACTGAACCTTACCCTGAGATAATCTGTTTCAGACGATCGAAATATGC
CCGTTCTCCAGTTTCATCAATTAATCGATCTTCACCGATGAGTAAATCAG
CCTTGTGAACCAAAAGCATGCATAAAATCCAATGGTGCCCGTTAGTACAA
AAAATGCATATGAAGCAATCAGCATGTAACCAAAGTAGAGTATTCCAGAA
ACCAGCTTGGTTATTTCAAGCTTTGTGAAGAAGTAGAATGTTGCGTAAAG
GAAGAGGTACAGAGCAGAAGAGCCTGATGTAAGATATGACCTCCACCACC
ATTGGTAGTCCTCACTGCACAACTGGAAGTAGCATAGCACAATGGTTATT
TCGGCACAGGTGACAATGAGAATGACGAAGACCAAGAAGAGGAAACCAAA
GATGTAATAGAACTGGTTCAGCCAGATTGATGTGAGGATAAAGAAAAGTT
CAATGAAAACGGCTCCAAATGGAAGTATCCCTCCAATGAGAATTGAGAAG
ATTGGGTTCATATACCAAGCCTGCTCAGGGATTTGCCTTGGGATTTTGTT
TGTCTTCACCGGATCCTCAATTGCTGGCTTCTTGAAACCAACCAAACTGC
CAACATATAC
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