CF835197
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835197 vs. ExPASy Swiss-Prot
Match: NSA2_DICDI (Ribosome biogenesis protein NSA2 homolog OS=Dictyostelium discoideum GN=nsa2 PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 8.259e-34 Identity = 67/105 (63.81%), Postives = 87/105 (82.86%), Query Frame = 2 Query: 44 QLHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKKKK 358 +LH+KR G RLDH+E+ RKK AR HKRS IAQK G+K K++ KKRY+EKA MKKT+AMH+E ++++ DD+V+EGAVPAYLLDRE +RAKVLSN +KQK+K+ Sbjct: 8 ELHQKRFGRRLDHYEKVRKKTARAAHKRSAIAQKVTGLKAKLYNKKRYSEKAEMKKTIAMHQERTNKKASDDKVKEGAVPAYLLDREGVSRAKVLSNMVKQKRKE 112
BLAST of CF835197 vs. ExPASy Swiss-Prot
Match: NSA2_HUMAN (Ribosome biogenesis protein NSA2 homolog OS=Homo sapiens GN=TINP1 PE=1 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 5.919e-32 Identity = 63/105 (60.00%), Postives = 88/105 (83.81%), Query Frame = 2 Query: 44 QLHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKKKK 358 +LHRKR GYRLD+ E+KRKKE+RE H+RS+ A+K +G+K K++ K+R+AEK MKKT+ MHE+ ++++K D++ +GAVPAYLLDRE +RAKVLSN IKQK+K+ Sbjct: 8 ELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112
BLAST of CF835197 vs. ExPASy Swiss-Prot
Match: NSA2_RAT (Ribosome biogenesis protein NSA2 homolog OS=Rattus norvegicus GN=Tinp1 PE=2 SV=2) HSP 1 Score: 135.576 bits (340), Expect = 7.730e-32 Identity = 63/105 (60.00%), Postives = 87/105 (82.86%), Query Frame = 2 Query: 44 QLHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKKKK 358 +LHRKR GYRLD+ E+KRKKE RE H+RS+ A+K +G+K K++ K+R+AEK MKKT+ MHE+ ++++K D++ +GAVPAYLLDRE +RAKVLSN IKQK+K+ Sbjct: 8 ELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112
BLAST of CF835197 vs. ExPASy Swiss-Prot
Match: NSA2_MOUSE (Ribosome biogenesis protein NSA2 homolog OS=Mus musculus GN=Tinp1 PE=2 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 7.730e-32 Identity = 63/105 (60.00%), Postives = 87/105 (82.86%), Query Frame = 2 Query: 44 QLHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKKKK 358 +LHRKR GYRLD+ E+KRKKE RE H+RS+ A+K +G+K K++ K+R+AEK MKKT+ MHE+ ++++K D++ +GAVPAYLLDRE +RAKVLSN IKQK+K+ Sbjct: 8 ELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112
BLAST of CF835197 vs. ExPASy Swiss-Prot
Match: NSA2_BOVIN (Ribosome biogenesis protein NSA2 homolog OS=Bos taurus GN=TINP1 PE=2 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 7.730e-32 Identity = 63/105 (60.00%), Postives = 87/105 (82.86%), Query Frame = 2 Query: 44 QLHRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKKKK 358 +LHRKR GYRLD+ E+KRKKE RE H+RS+ A+K +G+K K++ K+R+AEK MKKT+ MHE+ ++++K D++ +GAVPAYLLDRE +RAKVLSN IKQK+K+ Sbjct: 8 ELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE 112
BLAST of CF835197 vs. ExPASy Swiss-Prot
Match: NSA2_ASHGO (Ribosome biogenesis protein NSA2 OS=Ashbya gossypii GN=NSA2 PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 4.542e-24 Identity = 58/102 (56.86%), Postives = 70/102 (68.63%), Query Frame = 2 Query: 50 HRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEG-AVPAYLLDRENTTRAKVLSNTIKQKK 352 H K++G RLDH ERKRK+EARE HK SE AQK G KGK FAKKRYAEK M+K + HE+S + G A+PAYLLDRE AK +S++IKQK+ Sbjct: 10 HIKKHGRRLDHEERKRKREAREAHKISEKAQKLTGWKGKQFAKKRYAEKVAMRKKIKAHEQSKLKGAAKPLEDSGEALPAYLLDREQANSAKAISSSIKQKR 111
BLAST of CF835197 vs. ExPASy Swiss-Prot
Match: NSA2_CANGA (Ribosome biogenesis protein NSA2 OS=Candida glabrata GN=NSA2 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 5.932e-24 Identity = 57/102 (55.88%), Postives = 72/102 (70.59%), Query Frame = 2 Query: 50 HRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEG-AVPAYLLDRENTTRAKVLSNTIKQKK 352 H K++G RLD+ ERKRK+EAREVHK +E AQK G KGK FAKKRYAEK M+K + HE+S ++ G A+P YLLDRE T AK +S++IKQK+ Sbjct: 10 HIKQHGRRLDYEERKRKREAREVHKVAEKAQKLTGWKGKQFAKKRYAEKVAMRKKIKAHEQSKAKGSSKPLADNGEALPTYLLDREQTNTAKAISSSIKQKR 111
BLAST of CF835197 vs. ExPASy Swiss-Prot
Match: NSA2_KLULA (Ribosome biogenesis protein NSA2 OS=Kluyveromyces lactis GN=NSA2 PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 7.748e-24 Identity = 61/103 (59.22%), Postives = 72/103 (69.90%), Query Frame = 2 Query: 50 HRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSR--RKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKK 352 H K++G RLDH ERKRK+EARE HK SE AQK G KGK FAKKRYAEK MKK + HE+S + K DE E A+P YLLDRE AK +S++IKQK+ Sbjct: 10 HIKQHGRRLDHDERKRKREAREAHKISEKAQKLTGWKGKQFAKKRYAEKVAMKKKIRAHEQSKVKGGSKPLDENGE-ALPTYLLDREQNNTAKAISSSIKQKR 111
BLAST of CF835197 vs. ExPASy Swiss-Prot
Match: NSA2_CRYNE (Ribosome biogenesis protein NSA2 OS=Cryptococcus neoformans GN=NSA2 PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 7.748e-24 Identity = 54/102 (52.94%), Postives = 72/102 (70.59%), Query Frame = 2 Query: 50 HRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSRRKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKKK 355 HRKR+G RLD+ E+KRK+ ARE HK S AQK G K K+ +R+AEK MKKTL H+E + ++K D V+EGA+PAYLLDR+ AK LS+ +K ++K Sbjct: 4 HRKRHGRRLDYEEKKRKRTAREAHKASADAQKIFGHKAKLHHARRHAEKVQMKKTLKAHDERNVKQKDDGAVKEGALPAYLLDRDGQKDAKALSSAVKDRRK 105
BLAST of CF835197 vs. ExPASy Swiss-Prot
Match: NSA2_VANPO (Ribosome biogenesis protein NSA2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=NSA2 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.726e-23 Identity = 59/103 (57.28%), Postives = 73/103 (70.87%), Query Frame = 2 Query: 50 HRKRNGYRLDHFERKRKKEAREVHKRSEIAQKALGIKGKMFAKKRYAEKALMKKTLAMHEESSSR--RKVDDEVQEGAVPAYLLDRENTTRAKVLSNTIKQKK 352 H K++G RLDH ERKRK+EARE HK SE AQK G KGK FAKKRY+EK M+K + HE+S + K DE + A+P YLLDRE T AK +S++IKQK+ Sbjct: 10 HIKQHGRRLDHEERKRKREAREAHKISERAQKLTGWKGKQFAKKRYSEKVAMRKKIKAHEQSKVKGGSKPLDESGD-ALPTYLLDREQTNTAKAISSSIKQKR 111 The following BLAST results are available for this feature:
BLAST of CF835197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835197 ID=CF835197; Name=CF835197; organism=Citrus sinensis; type=EST; length=360bpback to top |