CF835211
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.120e-23 Identity = 56/109 (51.38%), Postives = 68/109 (62.39%), Query Frame = 3 Query: 54 LMAGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380 + +GE AC YA LIL DDGIA+TAEKIA +VKAAN+++ESYWP+LFAKL EK+N++DLIL+VGS SDDDMGFSLFD Sbjct: 1 MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLILSVGSGGGAAPVAAAAPAGGAAAAAAPAVEEKKEEAKEESDDDMGFSLFD 109
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA11_ARATH (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=1 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 7.953e-19 Identity = 43/61 (70.49%), Postives = 53/61 (86.89%), Query Frame = 3 Query: 63 GEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 245 GE AC+YA +IL D+GIA+TA+KIA LVKAA V IESYWP LFAK+AEK+N+ DLI+NVG+ Sbjct: 5 GELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGA 65
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA13_ARATH (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.039e-18 Identity = 43/61 (70.49%), Postives = 53/61 (86.89%), Query Frame = 3 Query: 63 GEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 245 GE AC+YA +IL D+GIA+TA+KIA LVKAA V IESYWP LFAK+AEK+N+ DLI+NVG+ Sbjct: 5 GELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMNVGA 65
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA12_ARATH (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.039e-18 Identity = 42/61 (68.85%), Postives = 54/61 (88.52%), Query Frame = 3 Query: 63 GEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 245 GE AC+YA +IL D+GIA+T++KIA LVKAA V+IESYWP LFAK+AEK+N+ DLI+NVG+ Sbjct: 5 GELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGA 65
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_CHLRE (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 9.722e-17 Identity = 46/109 (42.20%), Postives = 59/109 (54.13%), Query Frame = 3 Query: 54 LMAGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380 + E ACTYA LILHDDG+ +TA+ I + KAA V++E YWP+LFAKL KK++DDLI NVG+ ++DMGFSLFD Sbjct: 1 MSTSELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLITNVGA--GGGAAPAAAAPAAGGAPAAGAAPKKEEKKEPSEEEDMGFSLFD 107
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_DROME (60S acidic ribosomal protein P1 OS=Drosophila melanogaster GN=RpLP1 PE=1 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 4.085e-15 Identity = 47/107 (43.93%), Postives = 55/107 (51.40%), Query Frame = 3 Query: 66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380 E AC YA+LIL DD +AVT EKI ++KAANV++E YWP LFAK E N+ DLI N+GS SDDDMGF LFD Sbjct: 6 ELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGFGLFD 112
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_CAEEL (60S acidic ribosomal protein P1 OS=Caenorhabditis elegans GN=rla-1 PE=1 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13 Identity = 45/106 (42.45%), Postives = 53/106 (50.00%), Query Frame = 3 Query: 66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380 E AC YA LIL DD +A+T EKIA L+KAANV+ E YWP LFAK E ++ +LI +V S SDDDMGF LFD Sbjct: 6 ELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA5_SCHPO (60S acidic ribosomal protein P1-alpha 5 OS=Schizosaccharomyces pombe GN=rpa5 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.716e-13 Identity = 40/109 (36.70%), Postives = 57/109 (52.29%), Query Frame = 3 Query: 54 LMAGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380 + A E A +YA LIL D+GI +T++K+ +L KA NV++E W ++FAK E K+L +L+LN+GS SD+DMGF LFD Sbjct: 1 MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIGSAGAASAPTAAGAGAAAPAEAAEEEKKEEAKEEEESDEDMGFGLFD 109
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_CLAHE (60S acidic ribosomal protein P1 OS=Cladosporium herbarum GN=CLAH12 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.716e-13 Identity = 45/110 (40.91%), Postives = 57/110 (51.82%), Query Frame = 3 Query: 54 LMAGEQACTYATLILHDDGIAVTAEKIAALVKAANV-QIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380 + A E A +YA LIL D+G+ +TA+K+ AL+ AA V +IE W SLFAK E K++ DL+LNVGS SDDDMGF LFD Sbjct: 1 MSAAELASSYAALILADEGLEITADKLQALISAAKVPEIEPIWTSLFAKALEGKDVKDLLLNVGSGGGAAPAAGGAAAGGAAAVLDAPAEEKAEEEKEESDDDMGFGLFD 110
BLAST of CF835211 vs. ExPASy Swiss-Prot
Match: RLA1_SCHPO (60S acidic ribosomal protein P1-alpha 1 OS=Schizosaccharomyces pombe GN=rpa1 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13 Identity = 40/109 (36.70%), Postives = 57/109 (52.29%), Query Frame = 3 Query: 54 LMAGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380 + A E A +Y+ LIL D+GI +T++K+ +L KAANV +E W ++FAK E K+L +L+LN+GS SD+DMGF LFD Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSGAGAAPVAGGAAAPAAADGEAPAEEKEEAKEEEESDEDMGFGLFD 109 The following BLAST results are available for this feature:
BLAST of CF835211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835211 ID=CF835211; Name=CF835211; organism=Citrus sinensis; type=EST; length=594bpback to top |