CF835328
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835328 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 5.122e-37 Identity = 88/166 (53.01%), Postives = 107/166 (64.46%), Query Frame = -2 Query: 254 SKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERFFEVGLGRVXXXXXXXXXXXINELQRRGKLLMEENERLRQQVAEVS-------------------------NAYGEEGQSSEFVNNICNSSNAPPPEFESSDPSLKLGL 676 SKNLE++DQPS+ELQL+EN+NYS L KE +EKSH LRQMRGEE+ GL++EELQ+LER E GL RV IN+LQ++G LMEENE+LRQQV E+S N E+GQSSE V N CNS + PP + +SSD SLKLGL Sbjct: 73 SKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKLRQQVMEISNNNNNNNNGYREAGVVIFEPENGFNNNNNEDGQSSESVTNPCNSIDPPPQDDDSSDTSLKLGL 238
BLAST of CF835328 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.306e-32 Identity = 82/169 (48.52%), Postives = 110/169 (65.09%), Query Frame = -2 Query: 242 SKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERFFEVGLGRVXXXXXXXXXXXINELQRRGKLLMEENERLRQQVAEVS--------------NAYG----------EEGQSSEFVNNICNSSNAPPPEFESSDPSLKLGLPYAG 676 SKNLE++DQPS+ELQL+EN++++ + KE A+KSH LRQMRGEE+ GL +EELQ+LE+ E GL RV I+ELQ++G LM+EN+RLRQQ +++ +A+G EEGQSSE + N NS+ A P + ESSD SL+LGLPY G Sbjct: 73 SKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQQGTQLTEENERLGMQICNNVHAHGGAESENAAVYEEGQSSESITNAGNSTGA-PVDSESSDTSLRLGLPYGG 240
BLAST of CF835328 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21 Identity = 68/152 (44.74%), Postives = 92/152 (60.53%), Query Frame = -2 Query: 251 SKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERFFEVGLGRVXXXXXXXXXXXINELQRRGKLLMEENERLRQQVAEVSNA---------YGEEGQSSEFVNNICNS-SNAPPPEFESSDPSLKLGLP 676 S NL + +QPS++L L E++ Y+ L ++ AE S LRQMRGEE+ GLS++ELQ+LE+ E GL RV I+ELQR+ L EEN +LR QV+++S A + EGQSSE V +S S+ + SD SLKLGLP Sbjct: 73 SNNLGKAEQPSLDLNL-EHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLRNQVSQISPAEKQVVDTENFVTEGQSSESVMTALHSGSSQSQDNDDGSDVSLKLGLP 223
BLAST of CF835328 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 1.656e-19 Identity = 71/174 (40.80%), Postives = 92/174 (52.87%), Query Frame = -2 Query: 251 SKNLERVD-QPSVELQL---------------------LENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERFFEVGLGRVXXXXXXXXXXXINELQRRGKLLMEENERLRQQVAEV----------SNAYGEEGQSSEFVNNICNSSNAPPPEFESSDPSLKLGLP 676 SKNL + D QPS++L LE++ S L ++ AE S LRQMRGEE+ GLS+EELQ++E+ E GL RV I+ELQR+G L EEN RLR Q+ +V N E+GQSSE V NS ++ + + SD SLKLGLP Sbjct: 73 SKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQLAEENMRLRDQMPQVPTAGLAVPDTENVLTEDGQSSESVMTALNSGSSQDND-DGSDISLKLGLP 245
BLAST of CF835328 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17 Identity = 64/155 (41.29%), Postives = 88/155 (56.77%), Query Frame = -2 Query: 254 SKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERFFEVGLGRVXXXXXXXXXXXINELQRRGKLLMEENERLRQQV-------------AEVSNAYGEEGQSSEFVNNICNSSNAPPPEFE-SSDPSLKLGL 676 SK L+R + ++LQ +++ + L +E AE S LRQMRGEE+H L++E+LQ+LE+ E GLG V I+ L+R+ L+EEN RL++Q+ S EEGQSSE V N S PPP+ + SSD SLKLGL Sbjct: 92 SKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLKEQLQVSRMSRMEEMQPGPDSEIVYEEGQSSESVTNA--SYPRPPPDNDYSSDTSLKLGL 244 The following BLAST results are available for this feature:
BLAST of CF835328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835328 ID=CF835328; Name=CF835328; organism=Citrus sinensis; type=EST; length=692bpback to top |