CF835366
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFH_ARATH (Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2) HSP 1 Score: 178.333 bits (451), Expect = 3.001e-44 Identity = 83/105 (79.05%), Postives = 93/105 (88.57%), Query Frame = -3 Query: 344 HNVGQIDQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQG 658 H GQI+ T+ FVKVYKSGSVGRSLDISRFSSY+ELREELG+MF IEG EDPLRSGWQLVFVD+END+LLLGDDPWE+FV+NVWYIKILSPEDV +MG+ G Sbjct: 693 HGAGQINSSNQTKNFVKVYKSGSVGRSLDISRFSSYHELREELGKMFAIEGLLEDPLRSGWQLVFVDKENDILLLGDDPWESFVNNVWYIKILSPEDVHQMGDHG 797
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSJ (Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 1.647e-42 Identity = 84/104 (80.77%), Postives = 94/104 (90.38%), Query Frame = -3 Query: 344 NVGQIDQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQG 655 N G+ D T RTFVKVYKSGSVGRSLDI+RFS+Y ELREELGQMFGI+G+ +DP RSGWQLVFVDRENDVLLLGDDPWE+FV++VWYIKILSPEDV KMG+QG Sbjct: 710 NTGENDPAT--RTFVKVYKSGSVGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWESFVNSVWYIKILSPEDVHKMGKQG 811
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSI (Auxin response factor 12 OS=Oryza sativa subsp. indica GN=ARF12 PE=2 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 1.647e-42 Identity = 84/104 (80.77%), Postives = 94/104 (90.38%), Query Frame = -3 Query: 344 NVGQIDQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQG 655 N G+ D T RTFVKVYKSGSVGRSLDI+RFS+Y ELREELGQMFGI+G+ +DP RSGWQLVFVDRENDVLLLGDDPWE+FV++VWYIKILSPEDV KMG+QG Sbjct: 708 NTGENDPAT--RTFVKVYKSGSVGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWESFVNSVWYIKILSPEDVHKMGKQG 809
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFF_ARATH (Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=2 SV=2) HSP 1 Score: 164.851 bits (416), Expect = 3.434e-40 Identity = 81/116 (69.83%), Postives = 98/116 (84.48%), Query Frame = -3 Query: 290 TRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVE--SFSPSSG--QRANSRGNC 625 + TFVKVYKSGS GRSLDIS+FSSY+ELR EL +MFG+EG+ EDP+RSGWQLVFVDRENDVLLLGDDPW FVS+VW IKILSP++VQ+MG++G+E + +PSS + S GNC Sbjct: 795 SNTFVKVYKSGSFGRSLDISKFSSYHELRSELARMFGLEGQLEDPVRSGWQLVFVDRENDVLLLGDDPWPEFVSSVWCIKILSPQEVQQMGKRGLELLNSAPSSNNVDKLPSNGNC 910
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSJ (Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 8.458e-39 Identity = 76/112 (67.86%), Postives = 96/112 (85.71%), Query Frame = -3 Query: 293 PTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANSRGN 628 P TFVKVYKSG+VGR LDI+RFSSY+ELR E+G++FG+EG+ EDPLRSGWQLVFVDRE+DVLL+GDDPW+ FV++V IKILSP++VQ+MG+ G+E FS S+ + NS N Sbjct: 775 PHATFVKVYKSGTVGRLLDITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGKPGIELFSTSARRLGNSCDN 886
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSI (Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 8.458e-39 Identity = 76/112 (67.86%), Postives = 96/112 (85.71%), Query Frame = -3 Query: 293 PTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANSRGN 628 P TFVKVYKSG+VGR LDI+RFSSY+ELR E+G++FG+EG+ EDPLRSGWQLVFVDRE+DVLL+GDDPW+ FV++V IKILSP++VQ+MG+ G+E FS S+ + NS N Sbjct: 775 PHATFVKVYKSGTVGRLLDITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGKPGIELFSTSARRLGNSCDN 886
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSJ (Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.143e-35 Identity = 73/109 (66.97%), Postives = 92/109 (84.40%), Query Frame = -3 Query: 302 PTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANS 628 P TFVKVYKSG+ GRSLDI+RFSSY+ELR ELG++FG+EG+ E+PLRSGWQLVFVDRE+DVLL+GDDPW+ FV++V IKILSP++VQ+MG+ E S + G+R S Sbjct: 784 PPATFVKVYKSGTYGRSLDITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGKP-FELLSSAPGKRLGS 891
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSI (Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.143e-35 Identity = 73/109 (66.97%), Postives = 92/109 (84.40%), Query Frame = -3 Query: 302 PTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANS 628 P TFVKVYKSG+ GRSLDI+RFSSY+ELR ELG++FG+EG+ E+PLRSGWQLVFVDRE+DVLL+GDDPW+ FV++V IKILSP++VQ+MG+ E S + G+R S Sbjct: 784 PPATFVKVYKSGTYGRSLDITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGKP-FELLSSAPGKRLGS 891
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFY_ORYSJ (Auxin response factor 25 OS=Oryza sativa subsp. japonica GN=ARF25 PE=2 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 2.547e-35 Identity = 71/110 (64.55%), Postives = 88/110 (80.00%), Query Frame = -3 Query: 290 TFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANSRGNC 619 TFVKVYKSGS+GRSLDISRFSSY ELR EL ++FG+EG+ EDP+RSGWQLVFVDREND+LL+GDDPW+ F ++VW IKILSP++VQ++ +G + S G R C Sbjct: 767 TFVKVYKSGSLGRSLDISRFSSYCELRSELERLFGLEGQLEDPVRSGWQLVFVDRENDILLVGDDPWQEFANSVWCIKILSPQEVQQL-VRGGDGLLSSPGARMQQSNAC 875
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFS_ARATH (Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2) HSP 1 Score: 125.561 bits (314), Expect = 2.309e-28 Identity = 60/109 (55.05%), Postives = 80/109 (73.39%), Query Frame = -3 Query: 314 DQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQ 640 +Q RT+ KV K GSVGRS+D++R+S Y+ELR +L +MFGIEG+ EDPL S W+LV+ D END+LL+GDDPWE FV+ V IKILS +VQ+M G + P++ Q Sbjct: 952 NQTQRMRTYTKVQKRGSVGRSIDVTRYSGYDELRHDLARMFGIEGQLEDPLTSDWKLVYTDHENDILLVGDDPWEEFVNCVQNIKILSSVEVQQMSLDGDLAAIPTTNQ 1060 The following BLAST results are available for this feature:
BLAST of CF835366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835366 ID=CF835366; Name=CF835366; organism=Citrus sinensis; type=EST; length=660bpback to top |