CF835398
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835398 vs. ExPASy Swiss-Prot
Match: SMD1_MOUSE (Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1 PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21 Identity = 55/98 (56.12%), Postives = 66/98 (67.35%), Query Frame = -2 Query: 250 MKLVRFLMKLNNETVSIELKXXXXXXXXXXXVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSXXXXXXXXXXXLRVKPKK--PIAGR 537 MKLVRFLMKL++ETV+IELK VD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDS +VK KK +AGR Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGR 98
BLAST of CF835398 vs. ExPASy Swiss-Prot
Match: SMD1_MACFA (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis GN=SNRPD1 PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21 Identity = 55/98 (56.12%), Postives = 66/98 (67.35%), Query Frame = -2 Query: 250 MKLVRFLMKLNNETVSIELKXXXXXXXXXXXVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSXXXXXXXXXXXLRVKPKK--PIAGR 537 MKLVRFLMKL++ETV+IELK VD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDS +VK KK +AGR Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGR 98
BLAST of CF835398 vs. ExPASy Swiss-Prot
Match: SMD1_HUMAN (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1 PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21 Identity = 55/98 (56.12%), Postives = 66/98 (67.35%), Query Frame = -2 Query: 250 MKLVRFLMKLNNETVSIELKXXXXXXXXXXXVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSXXXXXXXXXXXLRVKPKK--PIAGR 537 MKLVRFLMKL++ETV+IELK VD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDS +VK KK +AGR Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGR 98
BLAST of CF835398 vs. ExPASy Swiss-Prot
Match: SMD1_BOVIN (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus GN=SNRPD1 PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21 Identity = 55/98 (56.12%), Postives = 66/98 (67.35%), Query Frame = -2 Query: 250 MKLVRFLMKLNNETVSIELKXXXXXXXXXXXVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSXXXXXXXXXXXLRVKPKK--PIAGR 537 MKLVRFLMKL++ETV+IELK VD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDS +VK KK +AGR Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGR 98
BLAST of CF835398 vs. ExPASy Swiss-Prot
Match: SMD1_SCHPO (Probable small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces pombe GN=smd1 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 6.059e-20 Identity = 52/91 (57.14%), Postives = 60/91 (65.93%), Query Frame = -2 Query: 265 MKLVRFLMKLNNETVSIELKXXXXXXXXXXXVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSXXXXXXXXXXXLRVKPKK 537 MKLVRFLMKL NETVSIELK VD+ MNTHLK VK+T+KG+ PV ++ LS+RGNNIRYYILPDS + K KK Sbjct: 1 MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGNNIRYYILPDSLPLDTLLIDDSTKPKQKK 91
BLAST of CF835398 vs. ExPASy Swiss-Prot
Match: SMD1_DROME (Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila melanogaster GN=snRNP69D PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 6.059e-20 Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = -2 Query: 250 MKLVRFLMKLNNETVSIELKXXXXXXXXXXXVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSXXXXXXXXXXXLRVKPKKPIAGR 537 MKLVRFLMKL++ETV+IELK VD++MNTHLK+V++T+K ++PV+L+ LS+RGNNIRY+ILPDS + K KK +GR Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNIRYFILPDSLPLETLLIDDTPKSKTKKKDSGR 96
BLAST of CF835398 vs. ExPASy Swiss-Prot
Match: SMD1_CAEEL (Probable small nuclear ribonucleoprotein Sm D1 OS=Caenorhabditis elegans GN=snr-3 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 9.674e-18 Identity = 49/95 (51.58%), Postives = 59/95 (62.11%), Query Frame = -2 Query: 253 MKLVRFLMKLNNETVSIELKXXXXXXXXXXXVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSXXXXXXXXXXXLRVKPKKPIAG 537 MKLVRFLMKL++ETV+IELK VD++MNTHL+ V +T+K K PV LD LS+RGNNIRY ILPD R K + AG Sbjct: 1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGNNIRYIILPDPLALDTLLIDDEPRKKARAARAG 95 The following BLAST results are available for this feature:
BLAST of CF835398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835398 ID=CF835398; Name=CF835398; organism=Citrus sinensis; type=EST; length=622bpback to top |