CF835457

Overview
NameCF835457
Unique NameCF835457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig538 contig Csv1_Contig538:289..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF_VITVI (Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 7.898e-43
Identity = 81/95 (85.26%), Postives = 90/95 (94.74%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 285
            EKTG  AES+++F A+LP NDCRYAVYDFDFVTSENCQKSKIFFIAWSPD SRIRAKMLYATSK+RFRRELDG+HYEIQATDP+EMDLEV+R+RA
Sbjct:   48 EKTGGPAESFDEFAAALPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPDSSRIRAKMLYATSKERFRRELDGVHYEIQATDPTEMDLEVLRERA 142          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF11_ORYSJ (Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.393e-41
Identity = 75/95 (78.95%), Postives = 87/95 (91.58%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 285
            EKTG   ES++DF  SLP +DCRYA+YDFDFVT ENCQKSKIFF+AWSP VSRIRAKMLYATSK+RFRRELDG+HYEIQATDPSE+D+E++R+RA
Sbjct:   50 EKTGSSTESFDDFMDSLPESDCRYAIYDFDFVTEENCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDGVHYEIQATDPSELDIELLRERA 144          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF2_ORYSJ (Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica GN=ADF2 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.106e-39
Identity = 75/95 (78.95%), Postives = 84/95 (88.42%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 285
            EKTG   ESY+DF ASLP NDCRYA+YDFDFVT EN QKSKIFFIAWSP  SRIRAKMLY+TSKDR ++ELDG HYEIQATDP+E+DLEV+R+RA
Sbjct:   50 EKTGATTESYDDFLASLPENDCRYALYDFDFVTGENVQKSKIFFIAWSPSTSRIRAKMLYSTSKDRIKQELDGFHYEIQATDPTEVDLEVLRERA 144          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF6_ARATH (Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.013e-38
Identity = 75/95 (78.95%), Postives = 83/95 (87.37%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 285
            EKTG   ESY+DF ASLP NDCRYAVYDFDFVTSENCQKSKIFF AWSP  S IRAK+LY+TSKD+  REL GIHYEIQATDP+E+DLEV+R+RA
Sbjct:   51 EKTGNPTESYDDFLASLPDNDCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLRERA 145          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF10_ORYSJ (Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica GN=ADF10 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.884e-36
Identity = 69/95 (72.63%), Postives = 83/95 (87.37%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 285
            EKTG   ESY+DFTASLP +DCRYAVYD DFV+ +NC+KSKIFFI+WSP VSRIRAK +YA S+++FR ELDG+H+EIQATDP +MDLEV+R RA
Sbjct:   54 EKTGAPGESYDDFTASLPADDCRYAVYDLDFVSDDNCRKSKIFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHFEIQATDPDDMDLEVLRGRA 148          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF7_ARATH (Actin-depolymerizing factor 7 OS=Arabidopsis thaliana GN=ADF7 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.214e-36
Identity = 69/95 (72.63%), Postives = 82/95 (86.32%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 285
            EK G   E+Y+DFTASLP N+CRYAV+DFDF+T ENCQKSKIFFIAWSPD SR+R KM+YA+SKDRF+RELDGI  E+QATDPSEM  ++I+ RA
Sbjct:   42 EKLGNPDETYDDFTASLPANECRYAVFDFDFITDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRA 136          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF1_PETHY (Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.214e-36
Identity = 69/95 (72.63%), Postives = 82/95 (86.32%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 285
            EK G   ESYEDF ASLP N+CRYAVYDFDFVT+ENCQKS+IFFIAW PD +R+R+KM+YA+SKDRF+RELDGI  E+QA DP+EM L+VI+ RA
Sbjct:   44 EKIGEPTESYEDFAASLPENECRYAVYDFDFVTAENCQKSRIFFIAWCPDTARVRSKMIYASSKDRFKRELDGIQVELQACDPTEMGLDVIQSRA 138          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF9_ORYSJ (Actin-depolymerizing factor 9 OS=Oryza sativa subsp. japonica GN=ADF9 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.352e-36
Identity = 70/95 (73.68%), Postives = 80/95 (84.21%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 285
            E+ G  AE YEDF A+LP ++CRYAVYD DFVT ENCQKSKIFF +WSPD +R R+KMLYA+SKDRFRRELDGI  EIQATDPSEM L++IR RA
Sbjct:   44 ERLGQTAEGYEDFAATLPADECRYAVYDLDFVTDENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIIRARA 138          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF_BRANA (Actin-depolymerizing factor (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.595e-35
Identity = 68/95 (71.58%), Postives = 82/95 (86.32%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 285
            EK G   E+Y+DFTASLP ++CRYAV+DFDF T+ENCQKSKIFFIAWSPD SR+R KM+YA+SKDRF+RELDGI  E+QATDPSEM  ++I+ RA
Sbjct:   31 EKLGNPQETYDDFTASLPADECRYAVFDFDFTTNENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRA 125          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF10_ARATH (Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.595e-35
Identity = 67/94 (71.28%), Postives = 81/94 (86.17%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 282
            +K G   E+YEDFT S+P ++CRYAVYD+DF T ENCQKSKIFFIAWSPD SR+R+KMLYA+SKDRF+RELDGI  E+QATDPSEM L++I+ R
Sbjct:   44 DKLGNPEETYEDFTRSIPEDECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSLDIIKGR 137          
The following BLAST results are available for this feature:
BLAST of CF835457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
ADF_VITVI7.898e-4385.26Actin-depolymerizing factor OS=Vitis vinifera PE=2... [more]
ADF11_ORYSJ7.393e-4178.95Actin-depolymerizing factor 11 OS=Oryza sativa sub... [more]
ADF2_ORYSJ3.106e-3978.95Actin-depolymerizing factor 2 OS=Oryza sativa subs... [more]
ADF6_ARATH2.013e-3878.95Actin-depolymerizing factor 6 OS=Arabidopsis thali... [more]
ADF10_ORYSJ1.884e-3672.63Actin-depolymerizing factor 10 OS=Oryza sativa sub... [more]
ADF7_ARATH3.214e-3672.63Actin-depolymerizing factor 7 OS=Arabidopsis thali... [more]
ADF1_PETHY3.214e-3672.63Actin-depolymerizing factor 1 OS=Petunia hybrida G... [more]
ADF9_ORYSJ9.352e-3673.68Actin-depolymerizing factor 9 OS=Oryza sativa subs... [more]
ADF_BRANA1.595e-3571.58Actin-depolymerizing factor (Fragment) OS=Brassica... [more]
ADF10_ARATH1.595e-3571.28Actin-depolymerizing factor 10 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835457 ID=CF835457; Name=CF835457; organism=Citrus sinensis; type=EST; length=591bp
GAAAAGACTGGACCGTTTGCTGAGAGCTATGAGGATTTCACTGCATCTTT
GCCGCATAATGACTGTCGTTATGCAGTTTATGACTTTGATTTTGTGACCT
CAGAGAATTGTCAGAAAAGCAAGATCTTTTTCATTGCATGGTCTCCTGAC
GTGTCCCGAATCCGAGCTAAGATGCTGTATGCAACATCAAAGGACAGGTT
CAGGAGGGAGCTGGACGGCATCCACTATGAAATTCAGGCAACTGACCCAA
GTGAGATGGATCTTGAGGTGATCAGAGACCGTGCACGCTGAGAATTCACC
GAAGGAAAAGAATTTGTTTCCTTGAGACTGCATTTGTGGTCTGAAGGCAC
AAACTGTCCTCCAATTAGTTGCCGTATTTGTGTGGCACATAGTACATATA
GCTATTGTTAAATAATCAGCACCTGAGAAGGCTGATAACGAGCTCATGGC
TGAGGCACTGCGATGCCAGAGGACACGGGCTCTCTATTGCCATGATGCTT
CTCAGGTAAAATTGGACATGGTCATGGATATTTATGCTGTTCGACTTTTC
TTAATGAAATGGGTATTCTCATTAGAAAAAAAAAAAAAAAA
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