CF835563

Overview
NameCF835563
Unique NameCF835563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7095 contig Csv1_Contig7095:638..1288. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.874e-47
Identity = 104/230 (45.22%), Postives = 139/230 (60.43%), Query Frame = 2
Query:    2 ALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYD-----------SPFVSTSGNS---SSTPAANKSKTQVPVSGGGGG 649
            +L  L  S+PPSS SF S      LKPMLEFL +  S  M++ YP++AY  + +K+ L+YALF  +   VD   GL YSN+FDAQLDA++ A++A+S+  VKV+VTE+GWPS G   E              L+R V+   GTP +P + ++VYLF+LFNEN+K G  SERN+G+FY N   VY            SP  ST+G S   SS+P  N + T V + GGGGG
Sbjct:  159 SLAILSRSFPPSSASF-SKKHSAFLKPMLEFLVENESPFMIDLYPYYAYRDSTEKVPLEYALFESSSQVVDPATGLLYSNMFDAQLDAIYFALTAMSFKTVKVMVTESGWPSKGSPKETAATPENALAYNTNLIRHVIGDPGTPAKPGEEIDVYLFSLFNENRKPGIESERNWGMFYANGTNVYALDFTGENTTPVSPTNSTTGTSPSPSSSPIINGNST-VTIGGGGGG 386          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E1311_ARATH (Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.389e-46
Identity = 94/224 (41.96%), Postives = 136/224 (60.71%), Query Frame = 2
Query:    2 ALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSG--SGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPFV-----------STSGNSSSTPAANKSKTQVPVS 634
            +L  L++S+PPS+G F+ DL++ +L P+LEF RKT S  ++NAYPFFAY  N  ++ LD+ LF+ N G VD   G  Y N+  AQ+DAV++A++A  +  ++V ++ETGWPS GD++E              L++ ++SG  + TPL+P + L++Y+FALFNEN K GPTSERNYGLF P+    Y   F             T G +SS+          PVS
Sbjct:  161 SLSILKSSFPPSAGEFQPDLLD-SLTPILEFHRKTDSPFLINAYPFFAYKGNPKEVPLDFVLFQPNQGIVDPATGFHYDNMLFAQIDAVYSALAAAGFKSLRVEISETGWPSKGDDDEVGATPENAKRYNGNLIKMMMSGKKTKTPLKPNNDLSIYVFALFNENLKPGPTSERNYGLFKPDGTQAYSLGFALNDVVRGASGGGTGGGNSSSGGGRDKSPVFPVS 383          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E1310_ARATH (Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis thaliana GN=At5g42100 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.957e-44
Identity = 99/218 (45.41%), Postives = 135/218 (61.93%), Query Frame = 2
Query:    2 ALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSA--ISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGS-GTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPFVSTSGNSSSTPAANKSKTQVPVSGGGG 646
            +L  L  SYPPS+ SF+ DL+  +L P+L+F  KT S +++NAYPFFAY  N   +SLD+ LF+ N G  D G+   Y N+  AQ+DAV+ A+ A  ISY  V +VV+ETGWPS GD  E              L++ ++S    TP+RP+  L +++FALFNEN K GPTSERNYGLF P+   VY     ++S +SS + ++N   T    SGGGG
Sbjct:  159 SLAILDVSYPPSATSFRRDLLG-SLTPILDFHVKTGSPILINAYPFFAYEENPKHVSLDFVLFQPNQGFTDPGSNFHYDNMLFAQVDAVYHALDAVGISYKKVPIVVSETGWPSNGDPQEVGATCDNARKYNGNLIKMMMSKKMRTPIRPECDLTIFVFALFNENMKPGPTSERNYGLFNPDGTPVYSLGIKTSSTHSSGSGSSN--STGGSSSGGGG 373          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E1314_ARATH (Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500/F10A12.18 PE=1 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 5.044e-44
Identity = 84/185 (45.41%), Postives = 120/185 (64.86%), Query Frame = 2
Query:    2 ALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYD 556
            +L  L  SYPPSSGSFK + I+  L+P+L+F  +  S  ++NAYPFFAY  +  ++ L+Y LF+ N G VD    L Y N+  AQ+DA+++A+  + + D++V ++ETGWPS GDENE              L++ +    GTP +   P++VY+FALFNEN K GP SERNYGLFYP+ + VY+
Sbjct:  162 SLDILSTSYPPSSGSFKEEFIQ-YLQPLLDFHSQIESPFLINAYPFFAYKDSPKEVPLEYVLFQPNQGMVDPNTNLHYDNMLFAQVDALYSAIKTLGHTDIEVRISETGWPSKGDENEIGASPENAALYNGNLLKLIQQRKGTPAKQSVPIDVYVFALFNENLKPGPVSERNYGLFYPDGKPVYN 345          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.587e-44
Identity = 87/211 (41.23%), Postives = 132/211 (62.56%), Query Frame = 2
Query:    2 ALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENE-XXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPFVSTS----GNSSSTPAANKSKT 619
            +LG L  S+PPS+G+F S      L+PMLEFL +  S  M++ YP++AY  + + +SLDY LF  +   +D   GL Y N+FDAQ+DA++ A++A+++  +K++VTETGWP+ G   E               ++R V++  GTP +P + +NVY+F+LFNEN+K G  SERN+GLFYP++ +VY   F   S     NSS T ++  S +
Sbjct:  159 SLGILSRSFPPSAGAFNSSYAY-FLRPMLEFLAENKSPFMIDLYPYYAYRDSPNNVSLDYVLFESSSEVIDPNTGLLYKNMFDAQVDALYYALTALNFRTIKIMVTETGWPTKGSPKEKAAASSDNAETYNSNIIRHVVTNQGTPAKPGEAMNVYIFSLFNENRKAGLDSERNWGLFYPDQTSVYQLDFTGKSNGFHSNSSGTNSSGSSNS 368          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.193e-39
Identity = 86/200 (43.00%), Postives = 124/200 (62.00%), Query Frame = 2
Query:    2 ALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPFVSTSGNSSSTPA 601
            ++  L +S PPSSGSF +   +  LK +L+FL  T S   +N YPFFAY ++    +L + LF  N G+VDS  G+KY+N+FDAQ+DAV +A+ ++ +  V++VV ETGW S GD NE              L+  + S  GTPL P  P++ Y+FAL++EN K GP+SER +GLF  +   VYD   ++ S +SS TP+
Sbjct:  159 SMTVLGSSDPPSSGSFAAGY-QTGLKGILQFLSDTGSPFAINPYPFFAYQSDPRPETLAFCLFEPNAGRVDSKTGIKYTNMFDAQVDAVHSALKSMGFEKVEIVVAETGWASRGDANEVGASVDNAKAYNGNLIAHLRSMVGTPLMPGKPVDTYIFALYDENLKPGPSSERAFGLFKTDLSMVYDVG-LAKSSSSSQTPS 356          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.501e-37
Identity = 75/214 (35.05%), Postives = 125/214 (58.41%), Query Frame = 2
Query:    2 ALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGS--GTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPFVSTSGNSSSTPAANKSKTQVPVSG 637
            A+ +L++S+PPS+G+F+ ++  P + P+L+FL  T+SY  +N +P+F +S N    SLD+ALF+ +    D   GL Y NL D  LD+V  AM+ + Y  +++ ++ETGWP+ GD +E              L++++ +    GTP RP  P+  ++F+LFNENQK G  ++R++G+ +P+   +YD  F   +  +   P   K    VP  G
Sbjct:  174 AMDSLRSSFPPSNGTFREEITGPVMLPLLKFLNGTNSYFFLNVHPYFRWSRNPMNTSLDFALFQGHSTYTDPQTGLVYRNLLDQMLDSVLFAMTKLGYPHMRLAISETGWPNFGDIDETGANILNAATYNRNLIKKMSASPPIGTPSRPGLPIPTFVFSLFNENQKSGSGTQRHWGILHPDGSPIYDVDFTGQTPLTGFNPLP-KPTNNVPYKG 386          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.055e-36
Identity = 78/206 (37.86%), Postives = 109/206 (52.91%), Query Frame = 2
Query:   32 PSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPFVSTSGNSSSTPAANKSKTQVPVSGGGGG 649
            PS+ SF++         ML+F R T S  MVN YP+F+Y       +L+YALFR N G  D    L Y+++ DAQ+DA++ AM  + Y DV + V E GWP+  +  +              ++R   SG GTPL P      YLF+LF+ENQK GP +ER++GLF P+   VYD   +    + + TP+ N S    P     GG
Sbjct:  173 PSNASFRAGYNTKLFPAMLQFHRDTGSPFMVNPYPYFSYRPE----TLNYALFRPNSGIYDPATKLNYTSMLDAQMDAIYTAMKKLGYGDVDIAVGEAGWPTQAEPGQIGVGVQEARDFNEGMIRVCSSGKGTPLMPNRTFETYLFSLFDENQKPGPIAERHFGLFNPDFTPVYDLGLLRDGASVAPTPSPNPSPNPSPKPAPSGG 374          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.623e-36
Identity = 77/200 (38.50%), Postives = 123/200 (61.50%), Query Frame = 2
Query:    2 ALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRD-NPGQ--VDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPFVSTSGNSSS 592
            ++  +   +PPS+ +F S      +  +L+FL+ T S+ M+NAYP++ Y+       LDYALF+  +P +  VD    L Y+++FDA +DA + +M A++++ + VVVTETGWPS G  +E              L++RVL+ SG P +P  P+N Y++ L+NE+++ GP SERN+G+ +PN  +VY    +S SG SSS
Sbjct:  158 SMDIMPKPFPPSTSTF-SPSWNTTVYQLLQFLKNTGSFFMLNAYPYYGYTTANGIFPLDYALFKQLSPVKQIVDPNTLLHYNSMFDAMVDAAYYSMEALNFSKIPVVVTETGWPSSGGSDEAAATVANAETFNTNLIKRVLNNSGPPSQPDIPINTYIYELYNEDKRSGPVSERNWGILFPNGTSVYP---LSLSGGSSS 353          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.348e-33
Identity = 71/181 (39.23%), Postives = 109/181 (60.22%), Query Frame = 2
Query:   20 NSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRD---NPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVY 553
            +S+PPS   F     +P + P+L+FL+ T S L++N YP+F Y  +   I LDYALF+    N   VD+   L Y+N+FDA +DA + AMS +++ ++ +VVTE+GWPS G  +E              L++ V++ +GTP  P   +  Y++ L+NE+ + GP SE+N+GLFY N   VY
Sbjct:  161 DSFPPSQAFFNKTW-DPVIVPLLKFLQSTGSPLLLNVYPYFDYVQSNGVIPLDYALFQPLQANKEAVDANTLLHYTNVFDAIVDAAYFAMSYLNFTNIPIVVTESGWPSKGGPSEHDATVENANTYNSNLIQHVINKTGTPKHPGTAVTTYIYELYNEDTRPGPVSEKNWGLFYTNGTPVY 340          
The following BLAST results are available for this feature:
BLAST of CF835563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
E1312_ARATH4.874e-4745.22Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
E1311_ARATH5.389e-4641.96Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis... [more]
E1310_ARATH2.957e-4445.41Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis... [more]
E1314_ARATH5.044e-4445.41Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis... [more]
E1313_ARATH6.587e-4441.23Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]
E137_ARATH2.193e-3943.00Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
EA6_ARATH3.501e-3735.05Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]
E13B_WHEAT5.055e-3637.86Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]
E134_ARATH8.623e-3638.50Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis ... [more]
E133_ARATH2.348e-3339.23Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01H20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835563 ID=CF835563; Name=CF835563; organism=Citrus sinensis; type=EST; length=650bp
TGCTTTAGGTGCCTTACAAAATTCGTACCCGCCATCTTCCGGGTCGTTCA
AATCGGATCTCATCGAGCCCGCTTTGAAACCCATGTTGGAGTTTCTACGT
AAGACGTCGTCGTATCTCATGGTTAATGCGTATCCTTTTTTCGCCTACTC
TGCTAACGCGGATAAGATATCTTTAGACTACGCTCTGTTTAGGGATAATC
CCGGTCAGGTGGATTCAGGTAACGGGCTGAAGTATAGTAACCTTTTTGAC
GCCCAACTCGACGCCGTTTTCGCTGCCATGTCAGCAATCAGTTATAACGA
CGTGAAGGTTGTGGTGACGGAGACTGGATGGCCGTCTATGGGTGACGAGA
ATGAGGCGGGTGCTGGTGCGGCCAATGCCGCGGCGTACAACGGGAATCTA
GTACGTAGAGTCTTGTCTGGAAGTGGGACCCCCTTGAGACCAAAGGACCC
ACTTAACGTTTACCTCTTCGCTTTGTTCAATGAGAATCAAAAACAGGGTC
CCACATCGGAAAGGAATTACGGGTTGTTTTATCCCAACGAACAGACGGTG
TACGACTCGCCGTTTGTGTCAACTAGTGGGAACTCAAGCTCAACGCCGGC
AGCCAATAAGAGCAAGACTCAAGTTCCGGTGAGCGGAGGAGGAGGTGGTG
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