CF835873

Overview
NameCF835873
Unique NameCF835873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1944 contig Csv1_Contig1944:67..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835873 vs. ExPASy Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 9.284e-69
Identity = 141/222 (63.51%), Postives = 169/222 (76.13%), Query Frame = 2
Query:   62 GLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVA--RPGFTVRAQQASNEPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVL 721
            GLRG+S  QAVLEGS Q++G NRLN    SRV+V   R G  +RAQQ  + PE+SRR+++GLVAAG+A GSFV+AV A+A PIKV            T NSD+ RD  L LK+RF+IQPLSP           K+I+NVK  IDKKAWPYVQNDLRLRASYLRYDLNT+ISAKPK+EKQSLK+LT KLFQTI NLD+AA+ KS+P+AEKYY+ETVS+LN+VL
Sbjct:   10 GLRGAS--QAVLEGSLQINGSNRLNI---SRVSVGSQRTGLVIRAQQNVSVPESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVL 226          
BLAST of CF835873 vs. ExPASy Swiss-Prot
Match: PSBQ_SPIOL (Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea GN=PSBQ PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.859e-68
Identity = 139/221 (62.90%), Postives = 163/221 (73.76%), Query Frame = 2
Query:   62 GLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLPL-KERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVL 721
            GLRG+S  QAVLEGS Q+SG NRL+ P+ SRVAV + G  +RAQQ S E ETSRRAMLG VAAG+ASGSFV+AVLA+A PI V            T NSD+ RD  LP  K+RF++QPL P            +ILNVK+ ID+KAWP +QNDLRLRASYLRYDL T+ISAKPKDEK+SL+ LT KLF +I NLDHAAKIKS  EAEKYY +TVS +N+VL
Sbjct:   10 GLRGAS--QAVLEGSLQISGSNRLSGPTTSRVAVPKMGLNIRAQQVSAEAETSRRAMLGFVAAGLASGSFVKAVLAEARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVL 228          
BLAST of CF835873 vs. ExPASy Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 234.187 bits (596), Expect = 5.455e-61
Identity = 137/222 (61.71%), Postives = 161/222 (72.52%), Query Frame = 2
Query:   62 GLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVA-RPGFTVRAQQASNEPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXX-TLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVL 721
            GL G+S   AVLEGS +++G +RLN   + RVAVA R    VRAQQ+    ETSRR+++GLVAAG+A GSFVQAVLADA  IKV             T NSD+ RD  L LK+RF++QPL P           KDI+NVK LID+KAWPYVQNDLR +ASYLRYDLNTIIS+KPKDEK+SLK+LT KLF TI NLD+AAK KS  +AEKYYAETVS LN+VL
Sbjct:    6 GLHGAS--PAVLEGSLKINGSSRLNG--SGRVAVAQRSRLVVRAQQSE---ETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVL 220          
BLAST of CF835873 vs. ExPASy Swiss-Prot
Match: PSBQ_ONOVI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Onobrychis viciifolia GN=PSBQ PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.372e-56
Identity = 129/224 (57.59%), Postives = 155/224 (69.20%), Query Frame = 2
Query:   83 SQAVLEGSFQL-SGPNRLNAPSNSRVAVARPGFTVRAQQ---------ASNEPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLK-NLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVL 721
            +  +LEGS QL SG NR  + S+SR       F VRAQQ         ++ +P+++RRAMLGLVA G+AS SFVQAVLA+A PIKV            TLNSDE RDL LPLKERF+IQPLSP           K+I+ VK+ ID+K      NDLRLRASYLRYDLNT+IS+KPK++KQSLK +  GKLFQ I NLD+AAK+KS P+AEKYYA+ VSTLNDVL
Sbjct:    6 ASGLLEGSLQLMSGSNR--SSSSSRTRGPAGVFIVRAQQQEQQQGMSSSAADPQSNRRAMLGLVATGLASASFVQAVLAEAKPIKVGGPPPPSGGLGGTLNSDEARDLKLPLKERFYIQPLSPTEAAQRQRESAKEIVAVKKFIDQKLGHMFINDLRLRASYLRYDLNTVISSKPKEQKQSLKESSAGKLFQDIDNLDYAAKLKSAPQAEKYYADAVSTLNDVL 227          
BLAST of CF835873 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSJ (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0544800 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.078e-52
Identity = 113/203 (55.67%), Postives = 139/203 (68.47%), Query Frame = 2
Query:  116 SGPNRLNAPSNSRVAVARPGFTVRAQQASNEPETSRRAMLGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVL 721
            +GP R  A   SR+AV      VRA  A+ + +T RRA+LGLVA G+A G+  QA LA+A  PIK+            TLNSD+ RD DLPL+ERF++QPL P           +DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I++KPKDEK+ LK+LTGKLF TI  LDHAAKIKS  EAEKYY  T S L DVL
Sbjct:   19 AGPRR--AGGRSRLAV------VRADAAAADVQTGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLRERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVL 213          
BLAST of CF835873 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.078e-52
Identity = 113/203 (55.67%), Postives = 139/203 (68.47%), Query Frame = 2
Query:  116 SGPNRLNAPSNSRVAVARPGFTVRAQQASNEPETSRRAMLGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVL 721
            +GP R  A   SR+AV      VRA  A+ + +T RRA+LGLVA G+A G+  QA LA+A  PIK+            TLNSD+ RD DLPL+ERF++QPL P           +DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I++KPKDEK+ LK+LTGKLF TI  LDHAAKIKS  EAEKYY  T S L DVL
Sbjct:   19 AGPRR--AGGRSRLAV------VRADAAAADVQTGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLRERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVL 213          
BLAST of CF835873 vs. ExPASy Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.759e-51
Identity = 115/217 (53.00%), Postives = 141/217 (64.98%), Query Frame = 2
Query:   77 SHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNE-PETSRRAMLGLVAAGVASGSFVQAVLADATP-IKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVL 721
            + + A + G  Q   P+R  A S +R AV      VRA    +   +  RRA++GLVA G+  G+  QA  A+    IK+            TLNSD+ RD DLPLKERF++QPL P           +DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I++KPK+EK+SLK LTGKLF TI +LDHAAKIKSTPEAEKY+A T   L DVL
Sbjct:    2 AQAMASMTGLSQGVLPSR-RADSRTRTAVV----IVRASAEGDAVAQAGRRAVIGLVATGIVGGALSQAARAETVKTIKIGAPPPPSGGLPGTLNSDQARDFDLPLKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVL 213          
BLAST of CF835873 vs. ExPASy Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.957e-46
Identity = 102/196 (52.04%), Postives = 124/196 (63.27%), Query Frame = 2
Query:  137 APSNSRVAVARPGFTVRAQQASNEPETSRRAMLGLVAAGVASGSFVQAVLADATP-IKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVL 721
            A S +R AV     +    + +  P   R      + A  +S    QAV A+    IK+            TLNSD+ RD DLPLKERF++QPL P           +DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I++KPK+EK+SLK LTGKLF TI +LDHAAK+KSTPEAEKY+A T   L DVL
Sbjct:   20 ADSRTRTAVVVVRASAEGDRCAGGPRCDR------LVATASSPPLSQAVHAETVKTIKIGAPPPPSGGLPGTLNSDQTRDFDLPLKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVL 209          
The following BLAST results are available for this feature:
BLAST of CF835873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSBQ2_ARATH9.284e-6963.51Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
PSBQ_SPIOL7.859e-6862.90Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ1_ARATH5.455e-6161.71Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ_ONOVI2.372e-5657.59Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ORYSJ2.078e-5255.67Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ORYSI2.078e-5255.67Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ1_MAIZE1.759e-5153.00Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ2_MAIZE4.957e-4652.04Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02A18_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835873 ID=CF835873; Name=CF835873; organism=Citrus sinensis; type=EST; length=721bp
GAAGCAAAGTTTCTGAAACCCGATTTAGTGAAAAATGGCACAAGCTATGG
CGTCAATGGCTGGCTTACGTGGATCCTCCCACTCGCAGGCTGTTCTTGAA
GGTAGCTTCCAGCTCAGTGGCCCAAACCGCTTGAACGCCCCTAGCAACAG
CAGAGTTGCTGTGGCTCGCCCTGGTTTCACTGTTAGAGCCCAGCAGGCAT
CAAACGAGCCTGAAACTAGCCGCCGTGCTATGCTTGGTCTTGTTGCTGCA
GGTGTGGCCTCAGGTTCCTTTGTTCAAGCTGTACTTGCTGATGCCACTCC
CATCAAAGTTGGTCCTCCTCCCCCACCCTCTGGCGGATTGCCTGGAACGT
TGAACTCTGATGAGCCAAGAGACCTGGATCTGCCACTGAAGGAGAGGTTC
TTCATCCAACCACTTAGTCCAGCCCAGGCAGCAGAGAGAGCAAAGGCGTC
AGCAAAGGATATTCTTAATGTCAAGGAATTAATAGACAAGAAGGCCTGGC
CCTATGTTCAGAATGATCTCCGTCTCAGGGCCTCATACCTTCGCTATGAC
CTCAACACTATCATTTCTGCTAAGCCCAAAGATGAGAAACAATCCCTCAA
GAACCTCACTGGAAAGCTCTTCCAGACCATCGGCAATCTTGACCATGCGG
CAAAGATTAAGAGCACTCCTGAAGCAGAGAAATACTATGCGGAGACTGTA
TCTACCCTGAACGATGTTCTC
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