CF836045

Overview
NameCF836045
Unique NameCF836045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1035 contig Csv1_Contig1035:285..1058. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL13_ARATH (Squamosa promoter-binding-like protein 13 OS=Arabidopsis thaliana GN=SPL13 PE=2 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 1.011e-55
Identity = 116/218 (53.21%), Postives = 147/218 (67.43%), Query Frame = 2
Query:   65 MDWNLKPAWDFTE-FEQEAIPNVDAVDES-----SSRTKGNFSVDLKLGQVNSSAED---------SLNKCKEPGASKMESPSPSGSFKRARAANNGS-QTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLSRTGTFLSNYQGASLLPFS-SSHMYPSATVVKPTW 667
            MDWN K +  +   F+QE  P++  +D S     SS++K +FS DLKLG+   ++           SL+K K+   +K E  S S S KR R    G+ Q   CLVDGCDSD SNCR+YH+RHKVC++HSKTP V I G KQRFCQQCSRFH LEEFDEGKRSCRKRLDGHNRRRRKPQP+ + R   F + +QG+ LL FS  SH++P+ +V+ P+W
Sbjct:    1 MDWNFKLSSGYLSGFDQE--PDLSPMDGSISFGGSSQSKADFSFDLKLGRNIGNSSSVFGDTEQVISLSKWKDSALAKPEG-SRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPEHIGRPANFFTGFQGSKLLEFSGGSHVFPTTSVLNPSW 215          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL18_ORYSJ (Squamosa promoter-binding-like protein 18 OS=Oryza sativa subsp. japonica GN=SPL18 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.324e-47
Identity = 114/265 (43.02%), Postives = 152/265 (57.36%), Query Frame = 2
Query:   65 MDWNLKP--AWDFTEFEQEAIPNVDAVDESS-------SRTKG-----NFSVDLKLGQVNS-SAEDSLNK----CKEP------GASKMESPSPSGSFKRARAANNGS--QTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLSRTGTFLSNYQGASLLPFSSSHMYPSATVVKPTWTGVVNTEADARCYNEHHRLN--LPDERNLFFRSPSSS 772
            MDW+LK   +WD  E E  A+PN+ A   ++       + ++G       SVDLKLG +    A D+L +     K P       AS  + P  + + KR R    G   Q  SC VDGC +DLS  RDYHRRHKVCE HSKTP V++ G++ RFCQQCSRFH L EFDE KRSCRKRLDGHNRRRRKPQ D +S +G+F+++ QG     F+           +P+W G++ +E +   Y+ HH  +  +   +  F  SPSS+
Sbjct:    1 MDWDLKMPVSWDLAELEHNAVPNMAAAASAAEPGIAAVAASRGAPGRPECSVDLKLGGLGEFGAADALKEPAAAAKAPVSSAAAAASVAKVPPSTSTLKRPRGGGGGGGGQCPSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRSCRKRLDGHNRRRRKPQADSMS-SGSFMTSQQGTRFASFTPPR-------PEPSWPGIIKSE-ETPYYSHHHHPHPVMTSRQPHFVGSPSSA 256          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL16_ORYSJ (Squamosa promoter-binding-like protein 16 OS=Oryza sativa subsp. japonica GN=SPL16 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.266e-46
Identity = 112/252 (44.44%), Postives = 141/252 (55.95%), Query Frame = 2
Query:   65 MDWNLK----PAWDFT-EFEQEAIPNVDAVDESSSRTKGN-----------FSVDLKLG------------QVNSSAEDSLNKCKEPGASKMESPSPSGSFKRAR--AANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLSRTGTFLSNYQGASLLPFSSSHMYPSATVVKPTWTGVVNTEADARCYNEHHRLNL 730
            M+W+LK     +W+   E E      V A   SSS   G             SVDLKLG            +V  + E +  K     A+   + + S   KR R  AA    Q  SC VDGC  DLS CRDYHRRHKVCE HSKTP V++ G++ RFCQQCSRFH L+EFDE KRSCRKRLDGHNRRRRKPQPD ++ + ++L++ QGA   PF++    P A     +WTG++ TE     Y  HH++ L
Sbjct:    1 MEWDLKMPPAASWELADELENSGGGGVPAAVSSSSAAVGGGVNAGGGGRQECSVDLKLGGLGEFGGGGAQPRVAVAGEPAKGKGPAAAATGAAAAASSAPAKRPRGAAAAGQQQCPSCAVDGCKEDLSKCRDYHRRHKVCEAHSKTPLVVVSGREMRFCQQCSRFHLLQEFDEAKRSCRKRLDGHNRRRRKPQPDPMN-SASYLASQQGARFSPFATPR--PEA-----SWTGMIKTEESP--YYTHHQIPL 242          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL2_ORYSJ (Squamosa promoter-binding-like protein 2 OS=Oryza sativa subsp. japonica GN=SPL2 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.957e-39
Identity = 110/243 (45.27%), Postives = 136/243 (55.97%), Query Frame = 2
Query:   65 MDWNLK-PAWDFTEFEQEAIPNVDAVDESSSRTKGNFSVDLKLG-----------QVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTA--SCLVDGCDSDLSNC-RDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLSRTGTFLSNYQGASLLPFSSSHMYPSATVVKPTWT----GVVNTEADARCYNE--HHRLNL 730
            MDW+ K P+WD           V           G  ++DLKLG              S+A  ++     P AS   S + +G  KRARA   G Q A  +C V+GC +DLS C RDYHRRHKVCE HSKT  V + GQ+QRFCQQCSRFH L EFDE KRSCRKRLDGHN+RRRKPQPD L+  G   +N+ GA+    S   ++ +A  + P  T     VV TEA A  + E  +H L+L
Sbjct:    1 MDWDAKMPSWDLGTV-------VGPSGGGGGGGGGGGALDLKLGAPTSWKTTTTVSAASAAPAAVAPPPPPPASSSSSAAAAG--KRARAGQ-GQQAAVPACSVEGCAADLSKCVRDYHRRHKVCEAHSKTAVVTVAGQQQRFCQQCSRFHLLGEFDEEKRSCRKRLDGHNKRRRKPQPDPLN-PGNLFANHHGAARFT-SYPQIFSTAASMSPQETKWPANVVKTEA-ADVFQEPYYHALHL 230          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL19_ORYSJ (Putative squamosa promoter-binding-like protein 19 OS=Oryza sativa subsp. japonica GN=SPL19 PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.590e-35
Identity = 76/143 (53.15%), Postives = 92/143 (64.34%), Query Frame = 2
Query:  284 KRARAANNGSQ-----TASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLSRTGTFLSNYQGASLLPFSSSHMYPSATVVKPTWTGVVNTEADA 697
            +RAR  + G         +C VDGC SDLS CRDYHRRHKVCE H+KTP V++ GQ+QRFCQQCSRFH L EFD+GK+SCRKRLDGHNRRRRKPQ D L+            S LP+  ++ +     V P    + +  ADA
Sbjct:   74 RRARGGSGGGGGGGGGAEACSVDGCRSDLSRCRDYHRRHKVCEAHAKTPVVVVAGQEQRFCQQCSRFHNLAEFDDGKKSCRKRLDGHNRRRRKPQHDALN----------PRSFLPYHQANQFS----VYPQTFPIADQNADA 202          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL16_ARATH (Squamosa promoter-binding-like protein 16 OS=Arabidopsis thaliana GN=SPL16 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.019e-31
Identity = 78/181 (43.09%), Postives = 93/181 (51.38%), Query Frame = 2
Query:   68 DWNLKP-AWDFTEFEQEAIPNVDAVDESSSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLSRTGTFLSNYQGAS 607
            DW +    WD   FE   +         S +      +DL L    +  E +      P + K+ S SP            G     C VD C  DLS  +DYHRRHKVCE+HSK  + L+  Q QRFCQQCSRFH L EFDEGKRSCR+RLDGHNRRRRK QPD ++     L N    S
Sbjct:    8 DWQMNRWKWDGQRFEAIELQG------ESLQLSNKKGLDLNLPCGFNDVEGTPVDLTRP-SKKVRSGSPGSG------GGGGGNYPKCQVDNCKEDLSIAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLDGHNRRRRKTQPDAITSQVVALENRDNTS 175          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL14_ARATH (Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 1.737e-31
Identity = 78/173 (45.09%), Postives = 103/173 (59.54%), Query Frame = 2
Query:   68 DWNLKPAWDFTEFEQEAIPNVDAVDESSSRTKGNFS-----VDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRK-PQPDQLS 568
            +WN K  WD+     EA P VD   +    T  N S     +DL LG   ++ E++         +  ++  P+   K+ R+ + G     C VD C  DLS+ +DYHRRHKVCE+HSK  + L+  Q QRFCQQCSRFH L EFDEGKRSCR+RL GHNRRRRK  QP++++
Sbjct:   42 EWNSK-MWDWDSRRFEAKP-VDVEVQEFDLTLRNRSGEERGLDLNLGSGLTAVEET--------TTTTQNVRPN---KKVRSGSPGGNYPMCQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQPEEVA 201          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL3_ORYSJ (Squamosa promoter-binding-like protein 3 OS=Oryza sativa subsp. japonica GN=SPL3 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.870e-31
Identity = 68/141 (48.23%), Postives = 93/141 (65.96%), Query Frame = 2
Query:  176 VDLKLGQVNSSAED---SLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLSRTGTFLS 589
            + LKLG+  +  ED     N    P    + +PSP G  K+ + A   +Q   C V+GC+ DLS+ + YHR+H+VCE HSKT +V++ G ++RFCQQCSRFH L EFD+ KRSCR+RL  HN RRRKPQP+ +S + + LS
Sbjct:  131 IGLKLGK-RTYFEDVCGGQNVKSSPSGVSVATPSP-GLAKKVKVAQQNTQNPHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQKKRSCRRRLHDHNARRRKPQPEAISLSSSRLS 269          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL3_ORYSI (Squamosa promoter-binding-like protein 3 OS=Oryza sativa subsp. indica GN=SPL3 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.870e-31
Identity = 68/141 (48.23%), Postives = 93/141 (65.96%), Query Frame = 2
Query:  176 VDLKLGQVNSSAED---SLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLSRTGTFLS 589
            + LKLG+  +  ED     N    P    + +PSP G  K+ + A   +Q   C V+GC+ DLS+ + YHR+H+VCE HSKT +V++ G ++RFCQQCSRFH L EFD+ KRSCR+RL  HN RRRKPQP+ +S + + LS
Sbjct:  131 IGLKLGK-RTYFEDVCGGQNVKSSPSGVSVATPSP-GLAKKVKVAQQNTQNPHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQKKRSCRRRLHDHNARRRKPQPEAISLSSSRLS 269          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL12_ARATH (Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.277e-30
Identity = 61/101 (60.40%), Postives = 74/101 (73.27%), Query Frame = 2
Query:  311 SQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLSRTGTFLSNYQGASLL 613
            S+   C VD C +DLS  +DYHRRHKVCE+HSK    L+ G  QRFCQQCSRFH LEEFDEGKRSCR+RL GHN+RRRK  PD +   GT +S+ Q ++ +
Sbjct:  122 SRAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKANPDTIG-NGTSMSDDQTSNYM 221          
The following BLAST results are available for this feature:
BLAST of CF836045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
SPL13_ARATH1.011e-5553.21Squamosa promoter-binding-like protein 13 OS=Arabi... [more]
SPL18_ORYSJ1.324e-4743.02Squamosa promoter-binding-like protein 18 OS=Oryza... [more]
SPL16_ORYSJ7.266e-4644.44Squamosa promoter-binding-like protein 16 OS=Oryza... [more]
SPL2_ORYSJ2.957e-3945.27Squamosa promoter-binding-like protein 2 OS=Oryza ... [more]
SPL19_ORYSJ2.590e-3553.15Putative squamosa promoter-binding-like protein 19... [more]
SPL16_ARATH1.019e-3143.09Squamosa promoter-binding-like protein 16 OS=Arabi... [more]
SPL14_ARATH1.737e-3145.09Squamosa promoter-binding-like protein 14 OS=Arabi... [more]
SPL3_ORYSJ3.870e-3148.23Squamosa promoter-binding-like protein 3 OS=Oryza ... [more]
SPL3_ORYSI3.870e-3148.23Squamosa promoter-binding-like protein 3 OS=Oryza ... [more]
SPL12_ARATH3.277e-3060.40Squamosa promoter-binding-like protein 12 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836045 ID=CF836045; Name=CF836045; organism=Citrus sinensis; type=EST; length=774bp
GTTTGAGAAGGCGTTTAGGGAATTAATTAAAGAATAAAGTCCAACTCTTC
AACTGTTGGAGTTTATGGACTGGAACTTGAAACCAGCTTGGGATTTTACT
GAATTTGAGCAAGAAGCTATTCCTAACGTAGATGCAGTTGATGAGTCAAG
TAGCAGGACAAAAGGGAATTTCTCAGTTGATTTGAAGCTGGGTCAGGTTA
ATAGTTCGGCTGAAGATTCGTTGAATAAGTGTAAGGAGCCTGGTGCCTCA
AAAATGGAGTCTCCTTCACCTTCAGGGTCATTCAAGAGGGCCAGAGCAGC
TAACAATGGAAGCCAGACTGCGTCATGTCTTGTTGATGGGTGTGACTCGG
ACCTTAGTAATTGTAGGGATTACCATAGGCGCCATAAGGTGTGTGAGCTC
CACTCGAAGACGCCTCAGGTTTTGATTTGTGGGCAGAAGCAACGGTTCTG
TCAGCAATGCAGCAGATTTCATTGCCTGGAGGAGTTTGATGAAGGGAAGA
GAAGCTGCAGGAAACGTCTTGATGGGCACAACAGAAGACGAAGGAAACCT
CAGCCAGATCAGCTGTCACGTACTGGAACCTTTTTGTCCAATTACCAAGG
TGCCTCATTATTACCTTTCTCCAGTTCACATATGTATCCGTCCGCAACTG
TGGTGAAACCCACCTGGACTGGAGTTGTTAATACTGAAGCAGATGCAAGG
TGCTACAACGAGCATCATCGTCTAAACTTGCCTGACGAACGGAACCTATT
TTTCCGATCCCCTTCAAGCAGCTA
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